Evidence map›Paper›PMID 25808779›Full record

ArticleMolecular plant pathology2016

Analysis of the tomato leaf transcriptome during successive hemibiotrophic stages of a compatible interaction with the oomycete pathogen Phytophthora infestans.

Andrea P Zuluaga, Julio C Vega-Arreguín, Zhangjun Fei, Antonio J Matas, Sean Patev, William E Fry, Jocelyn K C Rose

Abstract read
In one paragraph

Article in Molecular plant pathology, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Genome-wide characterization of theFrontiers in genetics · 2022
    Article
  6. Strive or thrive: Trends inFrontiers in plant science · 2022
    Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Developmental Analysis ofFrontiers in plant science · 2020
    Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Two dominant loci determine resistance to Phomopsis cane lesions in FTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2018
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Andrea P ZuluagaSection of Plant Pathology and Plant Microbe Biology, School of Integrative Plant Science, Cornell University, Ithaca, NY, 14853, USA.
Julio C Vega-ArreguínSection of Plant Pathology and Plant Microbe Biology, School of Integrative Plant Science, Cornell University, Ithaca, NY, 14853, USA.
Zhangjun FeiBoyce Thompson Institute for Plant Research, Cornell University, Ithaca, NY, 14853, USA.
Antonio J MatasDepartamento de Biología Vegetal, Campus de Teatinos, Universidad de Málaga, 29071, Málaga, Spain.
Sean PatevSection of Plant Pathology and Plant Microbe Biology, School of Integrative Plant Science, Cornell University, Ithaca, NY, 14853, USA.
William E FrySection of Plant Pathology and Plant Microbe Biology, School of Integrative Plant Science, Cornell University, Ithaca, NY, 14853, USA.
Jocelyn K C RoseSection of Plant Biology, School of Integrative Plant Science, Cornell University, Ithaca, NY, 14853, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The infection of plants by hemibiotrophic pathogens involves a complex and highly regulated transition from an initial biotrophic, asymptomatic stage to a later necrotrophic state, characterized by cell death. Little is known about how this transition is regulated, and there are conflicting views regarding the significance of the plant hormones jasmonic acid (JA) and salicylic acid (SA) in the different phases of infection. To provide a broad view of the hemibiotrophic infection process from the plant perspective, we surveyed the transcriptome of tomato (Solanum lycopersicum) during a compatible interaction with the hemibiotrophic oomycete Phytophthora infestans during three infection stages: biotrophic, the transition from biotrophy to necrotrophy, and the necrotrophic phase. Nearly 10 000 genes corresponding to proteins in approximately 400 biochemical pathways showed differential transcript abundance during the three infection stages, revealing a major reorganization of plant metabolism, including major changes in source-sink relations, as well as secondary metabolites. In addition, more than 100 putative resistance genes and pattern recognition receptor genes were induced, and both JA and SA levels and associated signalling pathways showed dynamic changes during the infection time course. The biotrophic phase was characterized by the induction of many defence systems, which were either insufficient, evaded or suppressed by the pathogen.

Indexed as

Disease ResistanceGene Expression ProfilingGene Expression Regulation, PlantGene OntologyGenes, PlantHost-Pathogen InteractionsPhytophthora infestansPlant Growth RegulatorsPlant LeavesReceptors, Pattern RecognitionRNA, MessengerSolanum lycopersicumTime FactorsTranscriptomePlant Growth RegulatorsReceptors, Pattern RecognitionRNA, Messengerhemibiotrophic interactionSolanum lycopersicumtranscriptome

Identifiers

PMID25808779
PMCPMC6638369

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.