Evidence map›Paper›PMID 25808337›Full record

ArticleJournal of the Royal Society, Interface2015

The dynamic balance of import and export of zinc in Escherichia coli suggests a heterogeneous population response to stress.

Hiroki Takahashi, Taku Oshima, Jon L Hobman, Neil Doherty, Selina R Clayton, Mudassar Iqbal, Philip J Hill, Toru Tobe, Naotake Ogasawara, Shigehiko Kanaya and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of the Royal Society, Interface, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 24 citations in OpenAlex.

  1. The E. coli escape wave in response to external ZnBiometals : an international journal on the role of metal ions in biology, biochemistry, and medicine · 2025
    Article
  2. Review
  3. Article
  4. Article
  5. Zinc binding proteome of a phytopathogenRoyal Society open science · 2019
    Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Hiroki TakahashiMedical Mycology Research Center, Chiba University, 1-8-1 Inohana, Chuo-ku, Chiba, Chiba 260-8673, Japan hiroki.takahashi@chiba-u.jp.
Taku OshimaGraduate School of Biological Science, Nara Institute of Science and Technology, 8916-5, Takayama, Ikoma, Nara 630-0192, Japan.
Jon L HobmanSchool of Biosciences, The University of Nottingham, Sutton Bonington Campus, Sutton Bonington, Loughborough LE12 5RD, UK.
Neil DohertySchool of Biosciences, The University of Nottingham, Sutton Bonington Campus, Sutton Bonington, Loughborough LE12 5RD, UK.
Selina R ClaytonSchool of Biosciences, The University of Nottingham, Sutton Bonington Campus, Sutton Bonington, Loughborough LE12 5RD, UK.
Mudassar IqbalSchool of Biosciences, The University of Nottingham, Sutton Bonington Campus, Sutton Bonington, Loughborough LE12 5RD, UK.
Philip J HillSchool of Biosciences, The University of Nottingham, Sutton Bonington Campus, Sutton Bonington, Loughborough LE12 5RD, UK.
Toru TobeLaboratory of Molecular Medical Microbiology, Department of Biomedical Informatics, Osaka University Graduate School of Medicine, 1-7 Yamadaoka, Suita, Osaka 565-0871, Japan.
Naotake OgasawaraGraduate School of Biological Science, Nara Institute of Science and Technology, 8916-5, Takayama, Ikoma, Nara 630-0192, Japan.
Shigehiko KanayaGraduate School of Information Science, Nara Institute of Science and Technology, 8916-5, Takayama, Ikoma, Nara 630-0192, Japan.
Dov J StekelSchool of Biosciences, The University of Nottingham, Sutton Bonington Campus, Sutton Bonington, Loughborough LE12 5RD, UK dov.stekel@nottingham.ac.uk.
University of Nottingham · GBNara Institute of Science and Technology · JPChiba University Hospital · JPOsaka University · JP

Funding

Biotechnology and Biological Sciences Research Council BB/H531586/1
6 · The paper itself

Abstract

Zinc is essential for life, but toxic in excess. Thus all cells must control their internal zinc concentration. We used a systems approach, alternating rounds of experiments and models, to further elucidate the zinc control systems in Escherichia coli. We measured the response to zinc of the main specific zinc import and export systems in the wild-type, and a series of deletion mutant strains. We interpreted these data with a detailed mathematical model and Bayesian model fitting routines. There are three key findings: first, that alternate, non-inducible importers and exporters are important. Second, that an internal zinc reservoir is essential for maintaining the internal zinc concentration. Third, our data fitting led us to propose that the cells mount a heterogeneous response to zinc: some respond effectively, while others die or stop growing. In a further round of experiments, we demonstrated lower viable cell counts in the mutant strain tested exposed to excess zinc, consistent with this hypothesis. A stochastic model simulation demonstrated considerable fluctuations in the cellular levels of the ZntA exporter protein, reinforcing this proposal. We hypothesize that maintaining population heterogeneity could be a bet-hedging response allowing a population of cells to survive in varied and fluctuating environments.

Indexed as

Models, BiologicalAdenosine TriphosphatasesComputer SimulationEscherichia coliEscherichia coli ProteinsFeedback, PhysiologicalHeat-Shock ResponseMembrane Transport ProteinsModels, StatisticalZincAdenosine TriphosphatasesEscherichia coli ProteinsMembrane Transport ProteinsZincZn(II)-translocating P-type ATPaseZupT protein, E colibet hedgingEscherichia colimathematical modelstatistical inferencestress responsezinc homeostasis

Identifiers

PMID25808337
PMCPMC4424684
OpenAlexW2077848809

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.