Evidence map›Paper›PMID 25807068›Full record

ArticleNucleus (Austin, Tex.)2015

The tail domain of lamin B1 is more strongly modulated by divalent cations than lamin A.

Sairaam Ganesh, Zhao Qin, Stephen T Spagnol, Matthew T Biegler, Kelli A Coffey, Agnieszka Kalinowski, Markus J Buehler, Kris Noel Dahl

Open access · goldAbstract read
In one paragraph

Article in Nucleus (Austin, Tex.), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
  2. Integration of nuclear CaCellular and molecular life sciences : CMLS · 2023
    Article
  3. Telomere Homeostasis: Interplay with Magnesium.International journal of molecular sciences · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Sairaam Ganesha Biomedical Engineering; Carnegie Mellon University ; Pittsburgh , PA , USA.
Zhao Qin
Stephen T Spagnol
Matthew T Biegler
Kelli A Coffey
Agnieszka Kalinowski
Markus J Buehler
Kris Noel Dahl
University of Pittsburgh · USCarnegie Mellon University · USMassachusetts Institute of Technology · USInstitute of Chemical Engineering · BG

Funding

Molecular determinants of lamin a accumulation in human aging and diseaseF30AG030905 · NIA · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI KALINOWSKI, AGNIESZKA · 2009 to 2012
$185k
NIA NIH HHS F30 AG030905NIA NIH HHS F30-AG030905
6 · The paper itself

Abstract

The nucleoskeleton contains mainly nuclear intermediate filaments made of lamin proteins. Lamins provide nuclear structure and also play a role in various nuclear processes including signal transduction, transcription regulation and chromatin organization. The disparate functions of lamins may be related to the intrinsic disorder of the tail domains, which allows for altered and promiscuous binding. Here, we show modulation of lamin tail domain structures in the presence of divalent cations. We utilize changes in fluorescence of tryptophan residues within the Ig-fold flanked by disordered regions to experimentally measure protein thermodynamics. Using spectroscopy experiments and molecular dynamics simulations, we show that the tail domain of lamin B1 shows enhanced association with both Ca(2+) and Mg(2+) compared to the tail domain of lamin A. Binding curves show a similar KD between protein and ion (250-300 μM) for both proteins with both ions. However, we observe a maximum binding of ions to lamin B1 tail domain which is 2-3 times greater than that for lamin A tail domain by both experiment and simulation. Using simulations, we show that divalent ion association alters the Ig-fold by pinning flanking regions. With cells in culture, we observe altered lamin B1 organization in the presence of excess Mg(2+) more so than for lamin A. We suggest that the differential sensitivity to divalent cations contributes to the vastly different functionalities and binding of the 2 proteins.

Indexed as

Amino Acid SequenceCalciumCations, DivalentEscherichia coliFibroblastsGene ExpressionHumansKineticsLamin Type ALamin Type BMagnesiumMolecular Dynamics SimulationMolecular Sequence DataNuclear MatrixPrimary Cell CultureProtein BindingCalciumCations, DivalentLamin Type ALamin Type BMagnesiumRecombinant ProteinsGST, glutathione S-transferaseHFF, human foreskin fibroblastsintrinsically disordered proteinsLA, lamin AlaminLA-TD, the tail domain of lamin ALB1, lamin B1LB1-TD, the tail domain of lamin B1MD, molecular dynamicsmolecular dynamicsnucleoskeletonPME, particle mesh EwaldpreLA, prelamin ApreLA-TD, the tail domain of prelamin AREMD, replica exchange molecular dynamicsTD, tail domaintrLA-TD, lamin A tail domain truncated to be the same length as lamin B tail domainΔI/Io, change in intensity normalized to initial intensity

Identifiers

PMID25807068
PMCPMC4615889
OpenAlexW1605894314

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.