Evidence map›Paper›PMID 25806948›Full record

ArticlePLoS pathogens2015

Roles and programming of Arabidopsis ARGONAUTE proteins during Turnip mosaic virus infection.

Hernan Garcia-Ruiz, Alberto Carbonell, J Steen Hoyer, Noah Fahlgren, Kerrigan B Gilbert, Atsushi Takeda, Annalisa Giampetruzzi, Mayra T Garcia Ruiz, Michaela G McGinn, Nicholas Lowery and 2 more

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 104 papers.

0numbers the graph read from it
0cells of the map it votes in
104citing papers in PubMed
34.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

104 citing papers in PubMed, 195 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Small RNA mobility and plant virus diseases.Journal of experimental botany · 2026
    Review
  6. Review
  7. Review
  8. Article
  9. Article
  10. RNA interference shapes stress responses inFrontiers in plant science · 2025
    Review
  11. Article
  12. Article
  13. The plant siRNA landscape.The Plant cell · 2024
    Review
  14. Review
  15. Article
  16. Review
  17. Article
  18. Salicylic acid and RNA interference mediate antiviral immunity of plant stem cells.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  19. Article
  20. Infection Defects of RNA and DNA Viruses Induced by Antiviral RNA Interference.Microbiology and molecular biology reviews : MMBR · 2023
    Review

44 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Hernan Garcia-RuizDonald Danforth Plant Science Center, St. Louis, Missouri, United States of America; Center for Genome Research and Biocomputing, Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, United States of America.
Alberto CarbonellDonald Danforth Plant Science Center, St. Louis, Missouri, United States of America; Center for Genome Research and Biocomputing, Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, United States of America.
J Steen HoyerDonald Danforth Plant Science Center, St. Louis, Missouri, United States of America; Center for Genome Research and Biocomputing, Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, United States of America; Computational and Systems Biology Program, Washington University in St. Louis, St. Louis, Missouri, United States of America.
Noah FahlgrenDonald Danforth Plant Science Center, St. Louis, Missouri, United States of America; Center for Genome Research and Biocomputing, Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, United States of America.
Kerrigan B GilbertDonald Danforth Plant Science Center, St. Louis, Missouri, United States of America.
Atsushi TakedaCenter for Genome Research and Biocomputing, Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, United States of America.
Annalisa GiampetruzziCenter for Genome Research and Biocomputing, Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, United States of America.
Mayra T Garcia RuizDonald Danforth Plant Science Center, St. Louis, Missouri, United States of America.
Michaela G McGinnDonald Danforth Plant Science Center, St. Louis, Missouri, United States of America.
Nicholas LoweryCenter for Genome Research and Biocomputing, Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, United States of America.
Maria T Martinez BaladejoDonald Danforth Plant Science Center, St. Louis, Missouri, United States of America.
James C CarringtonDonald Danforth Plant Science Center, St. Louis, Missouri, United States of America; Center for Genome Research and Biocomputing, Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, United States of America.
Donald Danforth Plant Science Center · USOregon State University · US

Funding

Genetic Analysis of RNA Virus-Host InteractionR37AI043288 · NIAID · OREGON STATE UNIVERSITY · PI CARRINGTON, JAMES C · 2008 to 2017
$3.1M
GENETIC ANALYSIS OF RNA VIRUS-HOST INTERACTIONR01AI043288 · NIAID · WASHINGTON STATE UNIVERSITY · PI CARRINGTON, JAMES C · 1998 to 2007
$1.7M
GENETIC ANALYSIS OF RNA VIRUS-HOST INTERACTIONR21AI043288 · NIAID · WASHINGTON STATE UNIVERSITY · PI CARRINGTON, JAMES C · 1997 to 1997
–
NIAID NIH HHS AI43288NIAID NIH HHS R01 AI043288NIAID NIH HHS R21 AI043288NIAID NIH HHS R37 AI043288
6 · The paper itself

Abstract

In eukaryotes, ARGONAUTE proteins (AGOs) associate with microRNAs (miRNAs), short interfering RNAs (siRNAs), and other classes of small RNAs to regulate target RNA or target loci. Viral infection in plants induces a potent and highly specific antiviral RNA silencing response characterized by the formation of virus-derived siRNAs. Arabidopsis thaliana has ten AGO genes of which AGO1, AGO2, and AGO7 have been shown to play roles in antiviral defense. A genetic analysis was used to identify and characterize the roles of AGO proteins in antiviral defense against Turnip mosaic virus (TuMV) in Arabidopsis. AGO1, AGO2 and AGO10 promoted anti-TuMV defense in a modular way in various organs, with AGO2 providing a prominent antiviral role in leaves. AGO5, AGO7 and AGO10 had minor effects in leaves. AGO1 and AGO10 had overlapping antiviral functions in inflorescence tissues after systemic movement of the virus, although the roles of AGO1 and AGO10 accounted for only a minor amount of the overall antiviral activity. By combining AGO protein immunoprecipitation with high-throughput sequencing of associated small RNAs, AGO2, AGO10, and to a lesser extent AGO1 were shown to associate with siRNAs derived from silencing suppressor (HC-Pro)-deficient TuMV-AS9, but not with siRNAs derived from wild-type TuMV. Co-immunoprecipitation and small RNA sequencing revealed that viral siRNAs broadly associated with wild-type HC-Pro during TuMV infection. These results support the hypothesis that suppression of antiviral silencing during TuMV infection, at least in part, occurs through sequestration of virus-derived siRNAs away from antiviral AGO proteins by HC-Pro. These findings indicate that distinct AGO proteins function as antiviral modules, and provide a molecular explanation for the silencing suppressor activity of HC-Pro.

Indexed as

ArabidopsisArabidopsis ProteinsArgonaute ProteinsPlant DiseasesTymovirusArabidopsis ProteinsArgonaute Proteins

Identifiers

PMID25806948
PMCPMC4373807
OpenAlexW2098500177

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.