Evidence map›Paper›PMID 25806039›Full record

ArticleFrontiers in plant science2015

Citrus PH5-like H(+)-ATPase genes: identification and transcript analysis to investigate their possible relationship with citrate accumulation in fruits.

Cai-Yun Shi, Rui-Qin Song, Xiao-Mei Hu, Xiao Liu, Long-Fei Jin, Yong-Zhong Liu

Open access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
5.2field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 54 citations in OpenAlex.

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  6. Horticulture research · 2023
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  17. Citrus Taste Modification Potentials by Genetic Engineering.International journal of molecular sciences · 2019
    Review
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Cai-Yun ShiKey Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University Wuhan, China ; Key Laboratory of Horticultural Crop Biology and Genetic Improvement (Central Region), Ministry of Education Wuhan, China.
Rui-Qin SongKey Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University Wuhan, China ; Key Laboratory of Horticultural Crop Biology and Genetic Improvement (Central Region), Ministry of Education Wuhan, China.
Xiao-Mei HuKey Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University Wuhan, China ; Key Laboratory of Horticultural Crop Biology and Genetic Improvement (Central Region), Ministry of Education Wuhan, China.
Xiao LiuKey Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University Wuhan, China ; Key Laboratory of Horticultural Crop Biology and Genetic Improvement (Central Region), Ministry of Education Wuhan, China.
Long-Fei JinKey Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University Wuhan, China ; Key Laboratory of Horticultural Crop Biology and Genetic Improvement (Central Region), Ministry of Education Wuhan, China.
Yong-Zhong LiuKey Laboratory of Horticultural Plant Biology, Ministry of Education, Huazhong Agricultural University Wuhan, China ; Key Laboratory of Horticultural Crop Biology and Genetic Improvement (Central Region), Ministry of Education Wuhan, China.
Huazhong Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

PH5 is a petunia gene that encodes a plasma membrane H(+)-ATPase and determines the vacuolar pH. The citrate content of fruit cell vacuoles influences citrus organoleptic qualities. Although citrus could have PH5-like homologs that are involved in citrate accumulation, the details are still unknown. In this study, extensive data-mining with the PH5 sequence and PCR amplification confirmed that there are at least eight PH5-like genes (CsPH1-8) in the citrus genome. CsPHs have a molecular mass of approximately 100 kDa, and they have high similarity to PhPH5, AtAHA10 or AtAHA2 (from 64.6 to 80.9%). They contain 13-21 exons and 12-20 introns and were evenly distributed into four subgroups of the P3A-subfamily (CsPH1, CsPH2, and CsPH3 in Group I, CsPH4 and CsPH5 in Group II, CsPH6 in Group IV, and CsPH7 and CsPH8 in Group III together with PhPH5). A transcript analysis showed that CsPH1, 3, and 4 were predominantly expressed in mature leaves, whereas CsPH2 and 7 were predominantly expressed in roots, CsPH5 and 6 were predominantly expressed in flowers, and CsPH8 was predominantly expressed in fruit juice sacs (JS). Moreover, the CsPH transcript profiles differed between orange and pummelo, as well as between high-acid and low-acid cultivars. The low-acid orange "Honganliu" exhibits low transcript levels of CsPH3, CsPH4, CsPH5, and CsPH8, whereas the acid-free pummelo (AFP) has only a low transcript level of CsPH8. In addition, ABA injection increased the citrate content significantly, which was accompanied by the obvious induction of CsPH2, 6, 7, and 8 transcript levels. Taken together, we suggest that CsPH8 seems likely to regulate citrate accumulation in the citrus fruit vacuole.

Indexed as

abscisic acidcitrate accumulationcitrusfruit developmentplasma membrane H+-ATPase

Identifiers

PMID25806039
PMCPMC4353184
OpenAlexW2075687503

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.