Evidence map›Paper›PMID 25806019›Full record

ArticleFrontiers in neurology2015

Long Non-Coding RNA Expression during Aging in the Human Subependymal Zone.

Guy Barry, Boris Guennewig, Samantha Fung, Dominik Kaczorowski, Cynthia Shannon Weickert

Open access · goldAbstract read
In one paragraph

Article in Frontiers in neurology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 46 citations in OpenAlex.

  1. Review
  2. Article
  3. Involvement of lncRNA TUG1 in HIV-1 Tat-Induced Astrocyte Senescence.International journal of molecular sciences · 2023
    Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Review
  10. Article
  11. Article
  12. From Junk to Function: LncRNAs in CNS Health and Disease.Frontiers in molecular neuroscience · 2021
    Review
  13. Advances in transcriptome analysis of human brain aging.Experimental & molecular medicine · 2020
    Review
  14. Article
  15. Review
  16. Review
  17. Article
  18. Article
  19. Aging well witheLife · 2019
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 1 country.

Guy BarryGarvan Institute of Medical Research , Sydney, NSW , Australia ; St Vincent's Clinical School and School of Biotechnology and Biomolecular Sciences, University of New South Wales , Sydney, NSW , Australia.
Boris GuennewigGarvan Institute of Medical Research , Sydney, NSW , Australia ; St Vincent's Clinical School and School of Biotechnology and Biomolecular Sciences, University of New South Wales , Sydney, NSW , Australia.
Samantha FungSchizophrenia Research Institute , Sydney, NSW , Australia ; Schizophrenia Research Laboratory, Neuroscience Research Australia , Sydney, NSW , Australia ; School of Psychiatry, University of New South Wales , Sydney, NSW , Australia.
Dominik KaczorowskiGarvan Institute of Medical Research , Sydney, NSW , Australia.
Cynthia Shannon WeickertSchizophrenia Research Institute , Sydney, NSW , Australia ; Schizophrenia Research Laboratory, Neuroscience Research Australia , Sydney, NSW , Australia ; School of Psychiatry, University of New South Wales , Sydney, NSW , Australia.
UNSW Sydney · AUGarvan Institute of Medical Research · AUNeuroscience Research Australia · AUSchizophrenia Research Institute · AU

Funding

Brain Tissue Resource Centre for Alcohol ResearchR28AA012725 · NIAAA · UNIVERSITY OF SYDNEY · PI Greg Trevor Sutherland · 2012 to 2026
$7.0M
BRAIN TISSUE RESOURCE CENTER FOR ALCOHOL RESEARCHR24AA012725 · NIAAA · UNIVERSITY OF SYDNEY · PI KRIL, JILLIAN JUNE · 2000 to 2011
$2.2M
NIAAA NIH HHS R24 AA012725NIAAA NIH HHS R28 AA012725
6 · The paper itself

Abstract

The human subependymal zone (SEZ) is debatably a source of newly born neurons throughout life and neurogenesis is a multi-step process requiring distinct transcripts during cell proliferation and early neuronal maturation, along with orchestrated changes in gene expression during cell state/fate transitions. Furthermore, it is becoming increasingly clear that the majority of our genome that results in production of non-protein-coding RNAs plays vital roles in the evolution, development, adaptation, and region-specific function of the human brain. We predicted that some transcripts expressed in the SEZ may be unique to this specialized brain region, and that a comprehensive transcriptomic analysis of this region would aid in defining expression changes during neuronal birth and growth in adult humans. Here, we used deep RNA sequencing of human SEZ tissue during adulthood and aging to characterize the transcriptional landscape with a particular emphasis on long non-coding RNAs (lncRNAs). The data show predicted age-related changes in mRNAs encoding proliferation, progenitor, and inflammatory proteins as well as a unique subset of lncRNAs that are highly expressed in the human SEZ, many of which have unknown functions. Our results suggest the existence of robust proliferative and neuronal differentiation potential in the adult human SEZ and lay the foundation for understanding the involvement of lncRNAs in postnatal neurogenesis and potentially associated neurodevelopmental diseases that emerge after birth.

Indexed as

aginginterneuronlong non-coding RNAneurodevelopmental diseaseneurogenesissubependymal zone

Identifiers

PMID25806019
PMCPMC4353253
OpenAlexW2015313743

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.