Evidence map›Paper›PMID 25805049›Full record

ArticleThe protein journal2015

Identification of Proteins Possibly Involved in Glucosinolate Metabolism in L. agilis R16 and E. coli VL8.

Vijitra Luang-In, Arjan Narbad, Fatma Cebeci, Mark Bennett, John T Rossiter

Abstract read
PubMed Publisher
In one paragraph

Article in The protein journal, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 15 citations in OpenAlex.

  1. Trial
  2. Broccoli consumption affects the human gastrointestinal microbiota.The Journal of nutritional biochemistry · 2019
    Trial
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Gut Glucosinolate Metabolism and Isothiocyanate Production.Molecular nutrition & food research · 2018
    Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 3 countries.

Vijitra Luang-InNatural Antioxidant Research Unit, Department of Biotechnology, Faculty of Technology, Mahasarakham University, Mahasarakham, 44150, Thailand, vijitra.luangin@gmail.com.
Arjan Narbad
Fatma Cebeci
Mark Bennett
John T Rossiter
Imperial College London · GBQuadram Institute · GBMahasarakham University · TH

Funding

Biotechnology and Biological Sciences Research Council BB/J004545/1Biotechnology and Biological Sciences Research Council BBS/E/F/00044437
6 · The paper itself

Abstract

This study was aimed to identify sinigrin-induced bacterial proteins potentially involved in the metabolism of glucosinolate in two glucosinolate-metabolising bacteria Lactobacillus agilis R16 and Escherichia coli VL8. Sinigrin (2 mM) was used to induce the proteins in both bacteria under anaerobic incubation for 8 h at 30 °C for L. agilis R16 and 37 °C for E. coli VL8 and the controls without sinigrin were performed. Allyl isothiocyanate and allyl nitrile as two degradation products of sinigrin were detected in sinigrin-induced cultures of L. agilis R16 (27% total products) and E. coli VL8 (38% total products) from a complete sinigrin degradation in 8 h for both bacteria. 2D gel electrophoresis was conducted to identify induced proteins with at least twofold increased abundance. Sinigrin-induced L. agilis R16 and the control produced 1561 and 1543 protein spots, respectively. For E. coli VL8, 1363 spots were detected in sinigrin-induced and 1354 spots in the control. A combination of distinct proteins and upregulated proteins of 32 and 35 spots in L. agilis R16 and E. coli VL8, respectively were detected upon sinigrin induction. Of these, 12 and 16 spots from each bacterium respectively were identified by LC-MS/MS. In both bacteria most of the identified proteins are involved in carbohydrate metabolism, oxidoreduction system and sugar transport while the minority belong to purine metabolism, hydrolysis, and proteolysis. This indicated that sinigrin induction led to the expressions of proteins with similar functions in both bacteria and these proteins may play a role in bacterial glucosinolate metabolism.

Indexed as

Bacterial ProteinsChromatography, High Pressure LiquidElectrophoresis, Gel, Two-DimensionalEscherichia coliGlucosinolatesGlycoside HydrolasesHydrolysisIsothiocyanatesLactobacillusNitrilesTandem Mass Spectrometryallyl cyanideallyl isothiocyanateBacterial ProteinsGlucosinolatesGlycoside HydrolasesIsothiocyanatesNitrilessinigrinthioglucosidase

Identifiers

PMID25805049
OpenAlexW2029819857

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.