Evidence map›Paper›PMID 25804404›Full record

ArticleEuropean journal of human genetics : EJHG2015

Partial USH2A deletions contribute to Usher syndrome in Denmark.

Shzeena Dad, Nanna D Rendtorff, Erik Kann, Anders Albrechtsen, Mana M Mehrjouy, Mads Bak, Niels Tommerup, Lisbeth Tranebjærg, Thomas Rosenberg, Hanne Jensen and 1 more

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in European journal of human genetics : EJHG, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.2field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 11 citations in OpenAlex.

  1. Review
  2. Article
  3. Molecular Inversion Probe-Based Sequencing ofInternational journal of molecular sciences · 2021
    Article
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  5. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Shzeena DadClinical Genetics Clinic, The Kennedy Center, Rigshospitalet, University of Copenhagen, Glostrup, Denmark.
Nanna D RendtorffDepartment of Cellular and Molecular Medicine, University of Copenhagen, Copenhagen, Denmark.
Erik KannClinical Genetics Clinic, The Kennedy Center, Rigshospitalet, University of Copenhagen, Glostrup, Denmark.
Anders AlbrechtsenDepartment of Biology, Computational and RNA Biology, University of Copenhagen, Copenhagen, Denmark.ORCID http://orcid.org/0000-0001-7306-031X
Mana M MehrjouyDepartment of Cellular and Molecular Medicine, University of Copenhagen, Copenhagen, Denmark.
Mads BakDepartment of Cellular and Molecular Medicine, University of Copenhagen, Copenhagen, Denmark.
Niels TommerupDepartment of Cellular and Molecular Medicine, University of Copenhagen, Copenhagen, Denmark.
Lisbeth TranebjærgDepartment of Cellular and Molecular Medicine, University of Copenhagen, Copenhagen, Denmark.
Thomas RosenbergDepartment of Ophthalmology, The National Eye Clinic, Copenhagen University Hospital, The Kennedy Center, Glostrup, Denmark.
Hanne JensenDepartment of Ophthalmology, The National Eye Clinic, Copenhagen University Hospital, The Kennedy Center, Glostrup, Denmark.
Lisbeth B MøllerClinical Genetics Clinic, The Kennedy Center, Rigshospitalet, University of Copenhagen, Glostrup, Denmark.
University of Copenhagen · DKCopenhagen University Hospital · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Usher syndrome is an autosomal recessive disorder characterized by congenital hearing impairment, progressive visual loss owing to retinitis pigmentosa and in some cases vestibular dysfunction. Usher syndrome is divided into three subtypes, USH1, USH2 and USH3. Twelve loci and eleven genes have so far been identified. Duplications and deletions in PCDH15 and USH2A that lead to USH1 and USH2, respectively, have previously been identified in patients from United Kingdom, Spain and Italy. In this study, we investigate the proportion of exon deletions and duplications in PCDH15 and USH2A in 20 USH1 and 30 USH2 patients from Denmark using multiplex ligation-dependent probe amplification (MLPA). Two heterozygous deletions were identified in USH2A, but no deletions or duplications were identified in PCDH15. Next-generation mate-pair sequencing was used to identify the exact breakpoints of the two deletions identified in USH2A. Our results suggest that USH2 is caused by USH2A exon deletions in a small fraction of the patients, whereas deletions or duplications in PCDH15 might be rare in Danish Usher patients.

Indexed as

Gene DeletionCadherin Related ProteinsCadherinsChromosome BreakpointsDenmarkExonsExtracellular Matrix ProteinsGene DuplicationHumansUsher SyndromesCadherin Related ProteinsCadherinsCDHR15, humanExtracellular Matrix ProteinsUSH2A protein, human

Identifiers

PMID25804404
PMCPMC4795208
OpenAlexW2059817789

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.