Evidence map›Paper›PMID 25804403›Full record

ArticleEuropean journal of human genetics : EJHG2015

Cerebral visual impairment and intellectual disability caused by PGAP1 variants.

Daniëlle G M Bosch, F Nienke Boonstra, Taroh Kinoshita, Shalini Jhangiani, Joep de Ligt, Frans P M Cremers, James R Lupski, Yoshiko Murakami, Bert B A de Vries

Open access · bronzeAbstract readCase Reports
In one paragraph

Article in European journal of human genetics : EJHG, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it, 20 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Recurrent status epilepticus and severe bifrontal hypometabolism in PGAP1-related neurodevelopmental disorder.Epileptic disorders : international epilepsy journal with videotape · 2025
    Article
  4. Article
  5. Observational
  6. Article
  7. Article
  8. Review
  9. Novel genetic causes for cerebral visual impairment.European journal of human genetics : EJHG · 2016
    Article
  10. Article
  11. Article
  12. Review
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 3 countries.

Daniëlle G M BoschDepartment of Human Genetics, Radboud University Medical Center, Nijmegen, The Netherlands.
F Nienke BoonstraBartiméus, Institute for the Visually Impaired, Zeist, The Netherlands.
Taroh KinoshitaResearch Institute for Microbial Diseases and WPI Immunology Frontier Research Center, Osaka University, Suita, Osaka, Japan.
Shalini JhangianiHuman Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA.
Joep de LigtDepartment of Human Genetics, Radboud University Medical Center, Nijmegen, The Netherlands.
Frans P M CremersDepartment of Human Genetics, Radboud University Medical Center, Nijmegen, The Netherlands.
James R LupskiHuman Genome Sequencing Center, Baylor College of Medicine, Houston, TX, USA.
Yoshiko MurakamiResearch Institute for Microbial Diseases and WPI Immunology Frontier Research Center, Osaka University, Suita, Osaka, Japan.
Bert B A de VriesDepartment of Human Genetics, Radboud University Medical Center, Nijmegen, The Netherlands.
Radboud University Nijmegen · NLOsaka University · JPBaylor College of Medicine · USRadboud Institute for Molecular Life Sciences · NLRadboud University Medical Center · NLTexas Children's Hospital · US

Funding

Baylor-Johns Hopkins Center for Mendelian GeneticsU54HG006542 · NHGRI · JOHNS HOPKINS UNIVERSITY · PI VALLE, DAVID · 2012 to 2015
$15.6M
NHGRI NIH HHS U54 HG006542NHGRI NIH HHS U54HG006542
6 · The paper itself

Abstract

Homozygous variants in PGAP1 (post-GPI attachment to proteins 1) have recently been identified in two families with developmental delay, seizures and/or spasticity. PGAP1 is a member of the glycosylphosphatidylinositol anchor biosynthesis and remodeling pathway and defects in this pathway are a subclass of congenital disorders of glycosylation. Here we performed whole-exome sequencing in an individual with cerebral visual impairment (CVI), intellectual disability (ID), and factor XII deficiency and revealed compound heterozygous variants in PGAP1, c.274_276del (p.(Pro92del)) and c.921_925del (p.(Lys308Asnfs*25)). Subsequently, PGAP1-deficient Chinese hamster ovary (CHO)-cell lines were transfected with either mutant or wild-type constructs and their sensitivity to phosphatidylinositol-specific phospholipase C (PI-PLC) treatment was measured. The mutant constructs could not rescue the PGAP1-deficient CHO cell lines resistance to PI-PLC treatment. In addition, lymphoblastoid cell lines (LCLs) of the affected individual showed no sensitivity to PI-PLC treatment, whereas the LCLs of the heterozygous carrier parents were partially resistant. In conclusion, we report novel PGAP1 variants in a boy with CVI and ID and a proven functional loss of PGAP1 and show, to our knowledge, for the first time this genetic association with CVI.

Indexed as

MutationAnimalsCell Line, TumorChildCHO CellsCricetinaeCricetulusHumansIntellectual DisabilityMaleMembrane ProteinsPhosphoinositide Phospholipase CPhosphoric Monoester HydrolasesSyndromeVision DisordersVisual PerceptionMembrane ProteinsPGAP1 protein, humanPhosphoinositide Phospholipase CPhosphoric Monoester Hydrolases

Identifiers

PMID25804403
PMCPMC4795198
OpenAlexW1996902266

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.