Evidence map›Paper›PMID 25803831›Full record

ArticlePloS one2015

ATG18 and FAB1 are involved in dehydration stress tolerance in Saccharomyces cerevisiae.

Gema López-Martínez, Mar Margalef-Català, Francisco Salinas, Gianni Liti, Ricardo Cordero-Otero

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 12 citations in OpenAlex.

  1. Review
  2. Truth in wine yeast.Microbial biotechnology · 2022
    Review
  3. Review
  4. Rapid Identification of Major QTLFrontiers in microbiology · 2018
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Gema López-MartínezDepartment of Biochemistry and Biotechnology, University Rovira i Virgili, Tarragona, Spain.
Mar Margalef-CatalàDepartment of Biochemistry and Biotechnology, University Rovira i Virgili, Tarragona, Spain.
Francisco SalinasInstitute of Research on Cancer and Ageing of Nice, University Sophia Antipolis, Nice, France.
Gianni LitiInstitute of Research on Cancer and Ageing of Nice, University Sophia Antipolis, Nice, France.
Ricardo Cordero-OteroDepartment of Biochemistry and Biotechnology, University Rovira i Virgili, Tarragona, Spain.
Universidad Rovira i Virgili · ESInstitut de Recherche sur le Cancer et le Vieillissement de Nice · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Recently, different dehydration-based technologies have been evaluated for the purpose of cell and tissue preservation. Although some early results have been promising, they have not satisfied the requirements for large-scale applications. The long experience of using quantitative trait loci (QTLs) with the yeast Saccharomyces cerevisiae has proven to be a good model organism for studying the link between complex phenotypes and DNA variations. Here, we use QTL analysis as a tool for identifying the specific yeast traits involved in dehydration stress tolerance. Three hybrids obtained from stable haploids and sequenced in the Saccharomyces Genome Resequencing Project showed intermediate dehydration tolerance in most cases. The dehydration resistance trait of 96 segregants from each hybrid was quantified. A smooth, continuous distribution of the anhydrobiosis tolerance trait was found, suggesting that this trait is determined by multiple QTLs. Therefore, we carried out a QTL analysis to identify the determinants of this dehydration tolerance trait at the genomic level. Among the genes identified after reciprocal hemizygosity assays, RSM22, ATG18 and DBR1 had not been referenced in previous studies. We report new phenotypes for these genes using a previously validated test. Finally, our data illustrates the power of this approach in the investigation of the complex cell dehydration phenotype.

Indexed as

Adaptation, PhysiologicalAutophagy-Related ProteinsBase SequenceChromosome MappingDehydrationHybridization, GeneticMembrane ProteinsMicroscopy, FluorescenceMolecular Sequence DataPhosphotransferases (Alcohol Group Acceptor)PlasmidsQuantitative Trait LociReal-Time Polymerase Chain ReactionReverse Transcriptase Polymerase Chain ReactionSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsATG18 protein, S cerevisiaeAutophagy-Related ProteinsFAB1 protein, S cerevisiaeMembrane ProteinsPhosphotransferases (Alcohol Group Acceptor)Saccharomyces cerevisiae Proteins

Identifiers

PMID25803831
PMCPMC4372426
OpenAlexW2033956674

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.