Evidence map›Paper›PMID 25803691›Full record

ArticlePloS one2015

Molecular characterization of melanoma cases in Denmark suspected of genetic predisposition.

Karin A W Wadt, Lauren G Aoude, Lotte Krogh, Lone Sunde, Anders Bojesen, Karen Grønskov, Nine Wartacz, Jakob Ek, Morten Tolstrup-Andersen, Mette Klarskov-Andersen and 10 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 2 pooled it
1.3field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 2 syntheses or guidelines pooled it, 21 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
  4. HGG advances · 2023
    Article
  5. Article
  6. Disease risk scores for skin cancers.Nature communications · 2021
    Observational
  7. Article
  8. Article
  9. Article
  10. Sherloc: a comprehensive refinement of the ACMG-AMP variant classification criteria.Genetics in medicine : official journal of the American College of Medical Genetics · 2017
    Article
  11. The Danish Melanoma Database.Clinical epidemiology · 2016
    Review
  12. Update in genetic susceptibility in melanoma.Annals of translational medicine · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 8 institutions in 3 countries.

Karin A W WadtDepartment of Clinical Genetics, University Hospital of Copenhagen, Copenhagen, Denmark.
Lauren G AoudeQIMR Berghofer Medical Research Institute, Brisbane, Australia.
Lotte KroghDepartment of Clinical Genetics, University hospital of Odense, Odense, Denmark.
Lone SundeDepartment of Clinical Genetics, University hospital of Århus, Århus, Denmark.
Anders BojesenDepartment of Clinical Genetics, Vejle hospital, Lillebaelt Hospital, Vejle, Denmark.
Karen GrønskovDepartment of Clinical Genetics, University Hospital of Copenhagen, Copenhagen, Denmark; Department of Cellular and Molecular Medicine, University of Copenhagen, Copenhagen, Denmark.
Nine WartaczDepartment of Clinical Genetics, University Hospital of Copenhagen, Copenhagen, Denmark.
Jakob EkDepartment of Clinical Genetics, University Hospital of Copenhagen, Copenhagen, Denmark.
Morten Tolstrup-AndersenDepartment of Clinical Genetics, University Hospital of Copenhagen, Copenhagen, Denmark.
Mette Klarskov-AndersenDepartment of Clinical Genetics, University Hospital of Copenhagen, Copenhagen, Denmark.
Åke BorgDepartment of Oncology, Lund University and Skåne University Hospital, Lund, Sweden.
Steffen HeegaardDepartment of Ophthalmology, Glostrup Hospital, University of Copenhagen, Denmark; Eye Pathology Institute, Department of Neuroscience and Pharmacology, University of Copenhagen, Copenhagen, Denmark.
Jens F KiilgaardDepartment of Ophthalmology, Glostrup Hospital, University of Copenhagen, Denmark.
Thomas V O HansenCenter for Genomic Medicine, Rigshospitalet, Copenhagen University hospital, Copenhagen, Denmark.
Kerenaftali KleinQIMR Berghofer Medical Research Institute, Brisbane, Australia.
Göran JönssonDepartment of Oncology, Lund University and Skåne University Hospital, Lund, Sweden.
Krzysztof T DrzewieckiDepartment of Plastic Surgery, Breast Surgery and Burns, Rigshospitalet, Copenhagen University Hospital, Copenhagen, Denmark.
Morten DunøDepartment of Clinical Genetics, University Hospital of Copenhagen, Copenhagen, Denmark.
Nicholas K HaywardQIMR Berghofer Medical Research Institute, Brisbane, Australia.
Anne-Marie GerdesDepartment of Clinical Genetics, University Hospital of Copenhagen, Copenhagen, Denmark.
Copenhagen University Hospital · DKQIMR Berghofer Medical Research Institute · AULund University · SEAarhus University Hospital · DKGlostrup Hospital · DKLillebaelt Hospital · DKOdense University Hospital · DKUniversity of Copenhagen · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Both environmental and host factors influence risk of cutaneous melanoma (CM), and worldwide, the incidence varies depending on constitutional determinants of skin type and pigmentation, latitude, and patterns of sun exposure. We performed genetic analysis of CDKN2A, CDK4, BAP1, MC1R, and MITFp.E318K in Danish high-risk melanoma cases and found CDKN2A germline mutations in 11.3% of CM families with three or more affected individuals, including four previously undescribed mutations. Rare mutations were also seen in CDK4 and BAP1, while MC1R variants were common, occurring at more than twice the frequency compared to Danish controls. The MITF p.E318K variant similarly occurred at an approximately three-fold higher frequency in melanoma cases than controls. To conclude, we propose that mutation screening of CDKN2A and CDK4 in Denmark should predominantly be performed in families with at least 3 cases of CM. In addition, we recommend that testing of BAP1 should not be conducted routinely in CM families but should be reserved for families with CM and uveal melanoma, or mesothelioma.

Indexed as

Cyclin-Dependent Kinase 4Cyclin-Dependent Kinase Inhibitor p16DenmarkGenes, NeoplasmGenetic Predisposition to DiseaseGenetic TestingGerm-Line MutationHumansMelanomaMicrophthalmia-Associated Transcription FactorReceptor, Melanocortin, Type 1Skin NeoplasmsTumor Suppressor ProteinsUbiquitin ThiolesteraseBAP1 protein, humanCDK4 protein, humanCyclin-Dependent Kinase 4Cyclin-Dependent Kinase Inhibitor p16Microphthalmia-Associated Transcription FactorMITF protein, humanReceptor, Melanocortin, Type 1Tumor Suppressor ProteinsUbiquitin Thiolesterase

Identifiers

PMID25803691
PMCPMC4372390
OpenAlexW1981748972

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.