Evidence map›Paper›PMID 25803672›Full record

ArticlePloS one2015

Variant rs1801157 in the 3'UTR of SDF-1ß does not explain variability of healthy-donor G-CSF responsiveness.

Miriam Schulz, Darja Karpova, Gabriele Spohn, Annette Damert, Erhard Seifried, Vera Binder, Halvard Bönig

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 1 pooled it
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 1 synthesis or guideline pooled it, 13 citations in OpenAlex.

  1. Pooled it
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  5. Article
  6. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Miriam SchulzGerman Red Cross Blood Service Baden-Württemberg-Hesse, Frankfurt, Germany.
Darja KarpovaInstitute for Transfusion Medicine and Immunohematology, Goethe University, Frankfurt, Germany.
Gabriele SpohnInstitute for Transfusion Medicine and Immunohematology, Goethe University, Frankfurt, Germany.
Annette DamertInstitute for Transfusion Medicine and Immunohematology, Goethe University, Frankfurt, Germany.
Erhard SeifriedGerman Red Cross Blood Service Baden-Württemberg-Hesse, Frankfurt, Germany; Institute for Transfusion Medicine and Immunohematology, Goethe University, Frankfurt, Germany.
Vera BinderDepartment of Pediatric Oncology, Hematology and Clinical Immunology, Medical Faculty, University of Duesseldorf, Duesseldorf, Germany.
Halvard BönigGerman Red Cross Blood Service Baden-Württemberg-Hesse, Frankfurt, Germany; Institute for Transfusion Medicine and Immunohematology, Goethe University, Frankfurt, Germany; University of Washington, Department of Medicine, Division of Hematology, Seattle, WA, United States of America.
Goethe University Frankfurt · DEGerman Red Cross · DEHeinrich Heine University Düsseldorf · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The genetics responsible for the inter-individually variable G-CSF responsiveness remain elusive. A single nucleotide polymorphism (SNP) in the 3'UTR of CXCL12, rs1801157, was implicated in X4-tropic HiV susceptibility and later, in two small studies, in G-CSR responsiveness in patients and donors. The position of the SNP in the 3'UTR together with in-silico predictions suggested differential binding of micro-RNA941 as an underlying mechanism. In a cohort of 515 healthy stem cell donors we attempted to reproduce the correlation of the CXCL12 3'UTR SNP and mobilization responses and tested the role of miR941 in this context. The SNP was distributed with the expected frequency. Mobilization efficiency for CD34+ cells in WT, heterozygous and homozygous SNP individuals was indistinguishable, even after controlling for gender. miR941 expression in non-hematopoietic bone marrow cells was undetectable and miR941 did not interact with the 3' UTR of CXCL12. Proposed effects of the SNP rs1801157 on G-CSF responsiveness cannot be confirmed in a larger cohort.

Indexed as

Healthy VolunteersPolymorphism, Single NucleotideStem Cell Transplantation3' Untranslated RegionsBase SequenceCell MovementChemokine CXCL12FemaleGene Expression RegulationGranulocyte Colony-Stimulating FactorHEK293 CellsHumansMaleMesenchymal Stem CellsMicroRNAs3' Untranslated RegionsChemokine CXCL12Granulocyte Colony-Stimulating FactorMicroRNAsMIRN941 microRNA, human

Identifiers

PMID25803672
PMCPMC4372333
OpenAlexW2135477939

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.