Evidence map›Paper›PMID 25803583›Full record

ArticlePloS one2015

slc7a6os gene plays a critical role in defined areas of the developing CNS in zebrafish.

Anna Benini, Francesca Cignarella, Laura Calvarini, Silvia Mantovanelli, Edoardo Giacopuzzi, Daniela Zizioli, Giuseppe Borsani

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.5field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Anna BeniniDepartment of Molecular and Translational Medicine, University of Brescia, Viale Europa 11, 25123, Brescia, Italy.
Francesca CignarellaDepartment of Molecular and Translational Medicine, University of Brescia, Viale Europa 11, 25123, Brescia, Italy.
Laura CalvariniDepartment of Molecular and Translational Medicine, University of Brescia, Viale Europa 11, 25123, Brescia, Italy.
Silvia MantovanelliDepartment of Molecular and Translational Medicine, University of Brescia, Viale Europa 11, 25123, Brescia, Italy.
Edoardo GiacopuzziDepartment of Molecular and Translational Medicine, University of Brescia, Viale Europa 11, 25123, Brescia, Italy.
Daniela ZizioliDepartment of Molecular and Translational Medicine, University of Brescia, Viale Europa 11, 25123, Brescia, Italy.
Giuseppe BorsaniDepartment of Molecular and Translational Medicine, University of Brescia, Viale Europa 11, 25123, Brescia, Italy.
University of Brescia · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The aim of this study is to shed light on the functional role of slc7a6os, a gene highly conserved in vertebrates. The Danio rerio slc7a6os gene encodes a protein of 326 amino acids with 46% identity to human SLC7A6OS and 14% to Saccharomyces cerevisiae polypeptide Iwr1. Yeast Iwr1 specifically binds RNA pol II, interacts with the basal transcription machinery and regulates the transcription of specific genes. In this study we investigated for the first time the biological role of SLC7A6OS in vertebrates. Zebrafish slc7a6os is a maternal gene that is expressed throughout development, with a prevalent localization in the developing central nervous system (CNS). The gene is also expressed, although at different levels, in various tissues of the adult fish. To determine the functional role of slc7a6os during zebrafish development, we knocked-down the gene by injecting a splice-blocking morpholino. At 24 hpf morphants show morphological defects in the CNS, particularly the interface between hindbrain and midbrain is not well-defined. At 28 hpf the morpholino injected embryos present an altered somite morphology and appear partially or completely immotile. At this stage the midbrain, hindbrain and cerebellum are compromised and not well defined compared with control embryos. The observed alterations persist at later developmental stages. Consistently, the expression pattern of two markers specifically expressed in the developing CNS, pax2a and neurod, is significantly altered in morphants. The co-injection of embryos with synthetic slc7a6os mRNA, rescues the morphant phenotype and restores the wild type expression pattern of pax2a and neurod. Our data suggest that slc7a6os might play a critical role in defined areas of the developing CNS in vertebrates, probably by regulating the expression of key genes.

Indexed as

ZebrafishAnalysis of VarianceAnimalsBase SequenceBrainCarrier ProteinsCentral Nervous SystemComputational BiologyGene Expression Regulation, DevelopmentalGene Expression Regulation, EnzymologicGene Knockdown TechniquesIn Situ HybridizationMolecular Sequence DataNerve Tissue ProteinsPeptide HydrolasesReal-Time Polymerase Chain ReactionCarrier ProteinsIWR1 protein, S cerevisiaeNerve Tissue ProteinsPeptide HydrolasesSLC7A6OS protein, humanSlc7a6os protein, zebrafishZebrafish Proteins

Identifiers

PMID25803583
PMCPMC4372478
OpenAlexW2030806164

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.