Evidence map›Paper›PMID 25803489›Full record

ArticleDNA and cell biology2015

Ebolavirus classification based on natural vectors.

Hui Zheng, Changchuan Yin, Tung Hoang, Rong Lucy He, Jie Yang, Stephen S-T Yau

Open access · greenAbstract read
In one paragraph

Article in DNA and cell biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
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  5. Geometric construction of viral genome space and its applications.Computational and structural biotechnology journal · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Hui Zheng1Department of Mathematics, Statistics, and Computer Science, University of Illinois at Chicago, Chicago, Illinois.
Changchuan Yin1Department of Mathematics, Statistics, and Computer Science, University of Illinois at Chicago, Chicago, Illinois.
Tung Hoang1Department of Mathematics, Statistics, and Computer Science, University of Illinois at Chicago, Chicago, Illinois.
Rong Lucy He2Department of Biological Sciences, Chicago State University, Chicago, Illinois.
Jie Yang1Department of Mathematics, Statistics, and Computer Science, University of Illinois at Chicago, Chicago, Illinois.
Stephen S-T Yau3Department of Mathematical Sciences, Tsinghua University, Beijing, People's Republic of China.
University of Illinois Chicago · USTsinghua University · CN

Funding

Role of serum amyloid A in interferon-gamma expression and T helper 1 cell differSC3GM098180 · NIGMS · CHICAGO STATE UNIVERSITY · PI HE, RONG LUCY · 2011 to 2014
$431k
NIGMS NIH HHS 5 SC3 GM098180-04
6 · The paper itself

Abstract

According to the WHO, ebolaviruses have resulted in 8818 human deaths in West Africa as of January 2015. To better understand the evolutionary relationship of the ebolaviruses and infer virulence from the relationship, we applied the alignment-free natural vector method to classify the newest ebolaviruses. The dataset includes three new Guinea viruses as well as 99 viruses from Sierra Leone. For the viruses of the family of Filoviridae, both genus label classification and species label classification achieve an accuracy rate of 100%. We represented the relationships among Filoviridae viruses by Unweighted Pair Group Method with Arithmetic Mean (UPGMA) phylogenetic trees and found that the filoviruses can be separated well by three genera. We performed the phylogenetic analysis on the relationship among different species of Ebolavirus by their coding-complete genomes and seven viral protein genes (glycoprotein [GP], nucleoprotein [NP], VP24, VP30, VP35, VP40, and RNA polymerase [L]). The topology of the phylogenetic tree by the viral protein VP24 shows consistency with the variations of virulence of ebolaviruses. The result suggests that VP24 be a pharmaceutical target for treating or preventing ebolaviruses.

Indexed as

EbolavirusEvolution, MolecularGenome, ViralMarburgvirusModels, GeneticMolecular TypingPhylogenySequence Analysis, DNA

Identifiers

PMID25803489
PMCPMC4484716
OpenAlexW1791822144

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.