Evidence map›Paper›PMID 25803487›Full record

ArticleeLife2015

In vitro generation of human pluripotent stem cell derived lung organoids.

Briana R Dye, David R Hill, Michael A H Ferguson, Yu-Hwai Tsai, Melinda S Nagy, Rachel Dyal, James M Wells, Christopher N Mayhew, Roy Nattiv, Ophir D Klein and 3 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 442 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
442citing papers in PubMed, 4 pooled it
28.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

442 citing papers in PubMed, 4 syntheses or guidelines pooled it, 816 citations in OpenAlex.

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382 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 1 country.

Briana R DyeDepartment of Cell and Developmental Biology, University of Michigan Medical School, Ann Arbor, United States.
David R HillDepartment of Internal Medicine, University of Michigan Medical School, Ann Arbor, United States.
Michael A H FergusonDepartment of Internal Medicine, University of Michigan Medical School, Ann Arbor, United States.
Yu-Hwai TsaiDepartment of Internal Medicine, University of Michigan Medical School, Ann Arbor, United States.
Melinda S NagyDepartment of Internal Medicine, University of Michigan Medical School, Ann Arbor, United States.
Rachel DyalDepartment of Internal Medicine, University of Michigan Medical School, Ann Arbor, United States.
James M WellsDivision of Developmental Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, United States.
Christopher N MayhewDivision of Developmental Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, United States.
Roy NattivInstitute for Human Genetics, Department of Pediatrics, University of California, San Francisco, San Francisco, United States.
Ophir D KleinInstitute for Human Genetics, Department of Pediatrics, University of California, San Francisco, San Francisco, United States.
Eric S WhiteDepartment of Internal Medicine, University of Michigan Medical School, Ann Arbor, United States.
Gail H DeutschDepartment of Laboratories, Seattle Children's Hospital and University of Washington, Seattle, United States.
Jason R SpenceDepartment of Cell and Developmental Biology, University of Michigan Medical School, Ann Arbor, United States.
University of Michigan–Ann Arbor · USCincinnati Children's Hospital Medical Center · USUniversity of California, San Francisco · USOrganogenesis (United States) · USSeattle Children's Hospital · US

Funding

TRAINING PROGRAM IN PEDIATRIC GASTROENTEROLOGY/NUTRITIONT32DK007762 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI James Bayrer · 1998 to 2026
$7.3M
Supplement to a Hox-Wnt-Sox signaling axis regulates lung development, patterning and branchingR01HL119215 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SPENCE, JASON · 2013 to 2021
$4.2M
Human Endocrine Cell DevelopmentR01DK092456 · NIDDK · CINCINNATI CHILDRENS HOSP MED CTR · PI WELLS, JAMES M · 2012 to 2016
$2.3M
Mechanisms of intestine developmentK01DK091415 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SPENCE, JASON · 2011 to 2015
$700k
Generating 3-D lung organoids in vitro from human pluripotent stem cellsR21HL115372 · NHLBI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SPENCE, JASON, WELLS, JAMES M · 2012 to 2013
$430k
NHLBI NIH HHS R01 HL119215NHLBI NIH HHS R01HL119215NHLBI NIH HHS R21 HL115372NHLBI NIH HHS R21HL115372NIDDK NIH HHS K01 DK091415NIDDK NIH HHS K01DK091415NIDDK NIH HHS R01 DK092456NIDDK NIH HHS T32 DK007762
6 · The paper itself

Abstract

Recent breakthroughs in 3-dimensional (3D) organoid cultures for many organ systems have led to new physiologically complex in vitro models to study human development and disease. Here, we report the step-wise differentiation of human pluripotent stem cells (hPSCs) (embryonic and induced) into lung organoids. By manipulating developmental signaling pathways hPSCs generate ventral-anterior foregut spheroids, which are then expanded into human lung organoids (HLOs). HLOs consist of epithelial and mesenchymal compartments of the lung, organized with structural features similar to the native lung. HLOs possess upper airway-like epithelium with basal cells and immature ciliated cells surrounded by smooth muscle and myofibroblasts as well as an alveolar-like domain with appropriate cell types. Using RNA-sequencing, we show that HLOs are remarkably similar to human fetal lung based on global transcriptional profiles, suggesting that HLOs are an excellent model to study human lung development, maturation and disease.

Indexed as

OrganogenesisCell Culture TechniquesCell DifferentiationCell LineCells, CulturedEmbryonic Stem CellsEndodermGene Expression ProfilingHumansInduced Pluripotent Stem CellsLungMicroscopy, ConfocalMicroscopy, Electron, TransmissionOrganoidsPluripotent Stem CellsReproducibility of Resultsdevelopmental biologyendodermforeguthumanlungorganoidspluripotent stem cellsspheroidstem cells

Identifiers

PMID25803487
PMCPMC4370217
OpenAlexW2156862506

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.