Evidence map›Paper›PMID 25803439›Full record

ArticlePloS one2015

Integrating solid-state NMR and computational modeling to investigate the structure and dynamics of membrane-associated ghrelin.

Gerrit Vortmeier, Stephanie H DeLuca, Sylvia Els-Heindl, Constance Chollet, Holger A Scheidt, Annette G Beck-Sickinger, Jens Meiler, Daniel Huster

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.5field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Capturing Peptide-GPCR Interactions and Their Dynamics.Molecules (Basel, Switzerland) · 2020
    Review
  6. Article
  7. Article
  8. Article
  9. Structure and dynamics of G protein-coupled receptor-bound ghrelin reveal the critical role of the octanoyl chain.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Gerrit VortmeierInstitute of Medical Physics and Biophysics, University of Leipzig, Leipzig, Germany.
Stephanie H DeLucaCenter for Structural Biology, Vanderbilt University, Nashville, Tennessee, 37232, United States of America.
Sylvia Els-HeindlInstitute of Biochemistry, University of Leipzig, Leipzig, Germany.
Constance CholletInstitute of Biochemistry, University of Leipzig, Leipzig, Germany.
Holger A ScheidtInstitute of Medical Physics and Biophysics, University of Leipzig, Leipzig, Germany.
Annette G Beck-SickingerInstitute of Biochemistry, University of Leipzig, Leipzig, Germany.
Jens MeilerCenter for Structural Biology, Vanderbilt University, Nashville, Tennessee, 37232, United States of America.
Daniel HusterInstitute of Medical Physics and Biophysics, University of Leipzig, Leipzig, Germany.
Leipzig University · DEVanderbilt University · US

Funding

Translational Analysis CoreP30DK058404 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI RICHARD M. PEEK · 2002 to 2026
$29.9M
Membrane Protein Structure Elucidation from sparse NMR data (KAMP)R01GM080403 · NIGMS · VANDERBILT UNIVERSITY · PI MEILER, JENS · 2007 to 2019
$3.0M
Small Molecule Probes to Investigate Structure and Function of Y ReceptorsR01DK097376 · NIDDK · VANDERBILT UNIVERSITY · PI MEILER, JENS, WEAVER, C DAVID · 2013 to 2015
$1.0M
Investigating the role of Substrate Binding in LeuT Transport With RosettaEPRF31GM100742 · NIGMS · VANDERBILT UNIVERSITY · PI DELUCA, STEPHANIE JUDITH HAN HIRST · 2012 to 2014
$60k
NIDDK NIH HHS P30 DK058404NIDDK NIH HHS R01 DK097376NIGMS NIH HHS F31 GM100742NIGMS NIH HHS F31-GM100742NIGMS NIH HHS R01 GM080403
6 · The paper itself

Abstract

The peptide hormone ghrelin activates the growth hormone secretagogue receptor 1a, also known as the ghrelin receptor. This 28-residue peptide is acylated at Ser3 and is the only peptide hormone in the human body that is lipid-modified by an octanoyl group. Little is known about the structure and dynamics of membrane-associated ghrelin. We carried out solid-state NMR studies of ghrelin in lipid vesicles, followed by computational modeling of the peptide using Rosetta. Isotropic chemical shift data of isotopically labeled ghrelin provide information about the peptide's secondary structure. Spin diffusion experiments indicate that ghrelin binds to membranes via its lipidated Ser3. Further, Phe4, as well as electrostatics involving the peptide's positively charged residues and lipid polar headgroups, contribute to the binding energy. Other than the lipid anchor, ghrelin is highly flexible and mobile at the membrane surface. This observation is supported by our predicted model ensemble, which is in good agreement with experimentally determined chemical shifts. In the final ensemble of models, residues 8-17 form an α-helix, while residues 21-23 and 26-27 often adopt a polyproline II helical conformation. These helices appear to assist the peptide in forming an amphipathic conformation so that it can bind to the membrane.

Indexed as

Models, MolecularCell MembraneComputational BiologyGhrelinHumansNuclear Magnetic Resonance, BiomolecularProtein ConformationGhrelin

Identifiers

PMID25803439
PMCPMC4372444
OpenAlexW2078655064

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.