Evidence map›Paper›PMID 25803108›Full record

ArticleInternational journal of molecular sciences2015

Favourable IFNL3 genotypes are associated with spontaneous clearance and are differentially distributed in Aboriginals in Canadian HIV-hepatitis C co-infected individuals.

Nasheed Moqueet, Claire Infante-Rivard, Robert W Platt, Jim Young, Curtis Cooper, Mark Hull, Sharon Walmsley, Marina B Klein, Canadian Co-Infection Study Investigators

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In one paragraph

Article in International journal of molecular sciences, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 2 countries.

Nasheed MoqueetDepartment of Epidemiology, Biostatistics and Occupational Health, McGill University, Montreal, QC H3A 1A2, Canada. nasheed.moqueet@mail.mcgill.ca.
Claire Infante-RivardDepartment of Epidemiology, Biostatistics and Occupational Health, McGill University, Montreal, QC H3A 1A2, Canada. claire.infante-rivard@mcgill.ca.
Robert W PlattDepartment of Epidemiology, Biostatistics and Occupational Health, McGill University, Montreal, QC H3A 1A2, Canada. robert.platt@mcgill.ca.
Jim YoungBasel Institute for Clinical Epidemiology and Biostatistics, University Hospital Basel, Basel 4031, Switzerland. jyoung@uhbs.ch.
Curtis CooperThe Ottawa Hospital-Research Institute, Ottawa, ON K1Y 4E9, Canada. ccooper@toh.on.ca.
Mark HullBC Centre for Excellence in HIV/AIDS, Vancouver, BC V6Z 1Y6, Canada. mhull@cfenet.ubc.ca.
Sharon WalmsleyToronto General Research Institute, University Health Network, University of Toronto, Toronto, ON M5G 2M9, Canada. sharon.walmsley@uhn.ca.
Marina B KleinDepartment of Epidemiology, Biostatistics and Occupational Health, McGill University, Montreal, QC H3A 1A2, Canada. marina.klein@mcgill.ca.
Canadian Co-Infection Study Investigators
McGill University · CAMcGill University Health Centre · CAAIDS Vancouver · CAOttawa Hospital · CARoyal Victoria Hospital · CAUniversity of Toronto · CA

Funding

Canadian Institutes of Health Research 201010MDRCanadian Institutes of Health Research HEO-115694
6 · The paper itself

Abstract

Canadian Aboriginals are reported to clear Hepatitis C (HCV) more frequently. We tested the association of spontaneous clearance and three single nucleotide polymorphisms (SNPs) near the Interferon-lambda 3 (IFNL3) gene (rs12979860, rs8099917, functional variant rs8103142) and compared the SNP frequencies between HIV-HCV co-infected whites and Aboriginals from the Canadian Co-infection Cohort. HCV treatment-naïve individuals with at least two HCV RNA tests were included (n = 538). A spontaneous clearance case was defined as someone with two consecutive HCV RNA-negative tests, at least six months apart. Data were analyzed using Cox proportional hazards adjusted for sex and ethnicity. Advantageous variants and haplotypes were more common in Aboriginals than Caucasians: 57% vs. 46% had the rs12979860 CC genotype, respectively; 58% vs. 48%, rs8103142 TT; 74% vs. 67%, the rs12979860 C allele; and 67% vs. 64% the TCT haplotype with three favourable alleles. The adjusted Hazard Ratios (95% CI) for spontaneous clearance were: rs12979860: 3.80 (2.20, 6.54); rs8099917: 5.14 (2.46, 10.72); and rs8103142: 4.36 (2.49, 7.62). Even after adjusting for rs12979860, Aboriginals and females cleared HCV more often, HR (95% CI) = 1.53 (0.89, 2.61) and 1.42 (0.79, 2.53), respectively. Our results suggest that favourable IFNL3 genotypes are more common among Aboriginals than Caucasians, and may partly explain the higher HCV clearance rates seen among Aboriginals.

Indexed as

AdultAntiviral AgentsFemaleGenotypeHaplotypesHepacivirusHepatitis CHIV InfectionsHumansInterferon LambdaInterferonsInterleukinsMaleMiddle AgedPolymorphism, Single NucleotideAntiviral AgentsInterferon Lambdainterferon-lambda, humanInterferonsInterleukins

Identifiers

PMID25803108
PMCPMC4394544
OpenAlexW2004463303

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.