Evidence map›Paper›PMID 25802875›Full record

ArticleJournal of immunology research2014

A Micropolymorphism Altering the Residue Triad 97/114/156 Determines the Relative Levels of Tapasin Independence and Distinct Peptide Profiles for HLA-A(*)24 Allotypes.

Soumya Badrinath, Heike Kunze-Schumacher, Rainer Blasczyk, Trevor Huyton, Christina Bade-Doeding

Abstract read
In one paragraph

Article in Journal of immunology research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. HLA micropolymorphisms confine neoantigen conformational adaptability and guide T cell receptor selectivity.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. Review
  3. Article
  4. Unravelling the Proteomics of HLA-B*57:01Journal of personalized medicine · 2022
    Article
  5. Review
  6. Molecular determinants of chaperone interactions on MHC-I for folding and antigen repertoire selection.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Soumya BadrinathInstitute for Transfusion Medicine, Hannover Medical School, Medical Park, Feodor Lynen Street 21, 30625 Hannover, Germany.
Heike Kunze-SchumacherInstitute for Transfusion Medicine, Hannover Medical School, Medical Park, Feodor Lynen Street 21, 30625 Hannover, Germany.ORCID 0000-0002-7416-6180
Rainer BlasczykInstitute for Transfusion Medicine, Hannover Medical School, Medical Park, Feodor Lynen Street 21, 30625 Hannover, Germany.
Trevor HuytonInstitute for Transfusion Medicine, Hannover Medical School, Medical Park, Feodor Lynen Street 21, 30625 Hannover, Germany.
Christina Bade-DoedingInstitute for Transfusion Medicine, Hannover Medical School, Medical Park, Feodor Lynen Street 21, 30625 Hannover, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

While many HLA class I molecules interact directly with the peptide loading complex (PLC) for conventional loading of peptides certain class I molecules are able to present peptides in a way that circumvents the PLC components. We investigated micropolymorphisms at position 156 of HLA-A(*)24 allotypes and their effects on PLC dependence for assembly and peptide binding specificities. HLA-A(*)24:06(156Trp) and HLA-A(*)24:13(156Leu) showed high levels of cell surface expression while HLA-A(*)24:02(156Gln) was expressed at low levels in tapasin deficient cells. Peptides presented by these allelic variants showed distinct differences in features and repertoire. Immunoprecipitation experiments demonstrated all the HLA-A(*)24/156 variants to associate at similar levels with tapasin when present. Structurally, HLA-A(*)24:02 contains the residue triad Met97/His114/Gln156 and a Trp156 or Leu156 polymorphism provides tapasin independence by stabilizing these triad residues, thus generating an energetically stable and a more peptide receptive environment. Micropolymorphisms at position 156 can influence the generic peptide loading pathway for HLA-A(*)24 by altering their tapasin dependence for peptide selection. The trade-off for this tapasin independence could be the presentation of unusual ligands by these alleles, imposing significant risk following hematopoietic stem cell transplantation (HSCT).

Indexed as

Amino AcidsAntigen PresentationAntigensCell LineGene Knockdown TechniquesHLA-A24 AntigenHumansMembrane Transport ProteinsPeptide FragmentsPolymorphism, GeneticProtein BindingProtein StabilityStructure-Activity RelationshipAmino AcidsAntigensHLA-A24 AntigenMembrane Transport ProteinsPeptide Fragmentstapasin

Identifiers

PMID25802875
PMCPMC4353853

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.