Evidence map›Paper›PMID 25802331›Full record

ArticleThe Journal of biological chemistry2015

A universal stress protein (USP) in mycobacteria binds cAMP.

Arka Banerjee, Ramona S Adolph, Jayashree Gopalakrishnapai, Silke Kleinboelting, Christiane Emmerich, Clemens Steegborn, Sandhya S Visweswariah

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 47 citations in OpenAlex.

  1. Article
  2. Journal of bacteriology · 2025
    Article
  3. Article
  4. Review
  5. eLife · 2024
    Article
  6. Review
  7. Article
  8. Article
  9. Universal Stress Proteins: From Gene to Function.International journal of molecular sciences · 2023
    Review
  10. Article
  11. Potential Efficacy ofMolecules (Basel, Switzerland) · 2022
    Article
  12. Article
  13. Review
  14. Identification of Potential Binders ofFrontiers in molecular biosciences · 2021
    Article
  15. A universal stress protein inThe Journal of biological chemistry · 2020
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Arka BanerjeeFrom the Department of Molecular Reproduction, Development and Genetics, Indian Institute of Science, Bangalore 560012, India and.
Ramona S Adolphthe Department of Biochemistry, University of Bayreuth, 95440 Bayreuth, Germany.
Jayashree GopalakrishnapaiFrom the Department of Molecular Reproduction, Development and Genetics, Indian Institute of Science, Bangalore 560012, India and.
Silke Kleinboeltingthe Department of Biochemistry, University of Bayreuth, 95440 Bayreuth, Germany.
Christiane Emmerichthe Department of Biochemistry, University of Bayreuth, 95440 Bayreuth, Germany.
Clemens Steegbornthe Department of Biochemistry, University of Bayreuth, 95440 Bayreuth, Germany.
Sandhya S VisweswariahFrom the Department of Molecular Reproduction, Development and Genetics, Indian Institute of Science, Bangalore 560012, India and sandhya@mrdg.iisc.ernet.in.
University of Bayreuth · DEIndian Institute of Science Bangalore · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mycobacteria are endowed with rich and diverse machinery for the synthesis, utilization, and degradation of cAMP. The actions of cyclic nucleotides are generally mediated by binding of cAMP to conserved and well characterized cyclic nucleotide binding domains or structurally distinct cGMP-specific and -regulated cyclic nucleotide phosphodiesterase, adenylyl cyclase, and E. coli transcription factor FhlA (GAF) domain-containing proteins. Proteins with cyclic nucleotide binding and GAF domains can be identified in the genome of mycobacterial species, and some of them have been characterized. Here, we show that a significant fraction of intracellular cAMP is bound to protein in mycobacterial species, and by using affinity chromatography techniques, we identify specific universal stress proteins (USP) as abundantly expressed cAMP-binding proteins in slow growing as well as fast growing mycobacteria. We have characterized the biochemical and thermodynamic parameters for binding of cAMP, and we show that these USPs bind cAMP with a higher affinity than ATP, an established ligand for other USPs. We determined the structure of the USP MSMEG_3811 bound to cAMP, and we confirmed through structure-guided mutagenesis, the residues important for cAMP binding. This family of USPs is conserved in all mycobacteria, and we suggest that they serve as "sinks" for cAMP, making this second messenger available for downstream effectors as and when ATP levels are altered in the cell.

Indexed as

Adenosine TriphosphateBacterial ProteinsCyclic AMPHeat-Shock ProteinsMycobacteriumGenome, BacterialSecond Messenger SystemsAdenosine TriphosphateBacterial ProteinsCyclic AMPHeat-Shock ProteinsCrystal StructureCyclic AMP (cAMP)Isothermal Titration Calorimetry (ITC)MycobacteriaSurface Plasmon Resonance (SPR)Universal Stress Protein

Identifiers

PMID25802331
PMCPMC4432290
OpenAlexW1992407765

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.