Evidence map›Paper›PMID 25802057›Full record

ArticleInfection and immunity2015

Transcription of TP0126, Treponema pallidum putative OmpW homolog, is regulated by the length of a homopolymeric guanosine repeat.

Lorenzo Giacani, Stephanie L Brandt, Wujian Ke, Tara B Reid, Barbara J Molini, Stefanie Iverson-Cabral, Giulia Ciccarese, Francesco Drago, Sheila A Lukehart, Arturo Centurion-Lara

Open access · bronzeAbstract read
In one paragraph

Article in Infection and immunity, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 39 citations in OpenAlex.

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  12. Notes on syphilis vaccine development.Frontiers in immunology · 2022
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  13. High-throughput nanopore sequencing ofFrontiers in microbiology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 3 countries.

Lorenzo GiacaniDepartment of Medicine, Division of Allergy and Infectious Diseases, University of Washington, Seattle, Washington, USA Department of Global Health, University of Washington, Seattle, Washington, USA giacal@u.washington.edu.
Stephanie L BrandtDepartment of Medicine, Division of Allergy and Infectious Diseases, University of Washington, Seattle, Washington, USA.
Wujian KeDepartment of Medicine, Division of Allergy and Infectious Diseases, University of Washington, Seattle, Washington, USA Graduate School, Southern Medical University, Guangzhou, People's Republic of China, and Division of STD, Guangdong Provincial Center for STI & Skin Diseases Control and Prevention, Guangzhou, People's Republic of China.
Tara B ReidDepartment of Medicine, Division of Allergy and Infectious Diseases, University of Washington, Seattle, Washington, USA.
Barbara J MoliniDepartment of Medicine, Division of Allergy and Infectious Diseases, University of Washington, Seattle, Washington, USA.
Stefanie Iverson-CabralDepartment of Medicine, Division of Allergy and Infectious Diseases, University of Washington, Seattle, Washington, USA.
Giulia CiccareseDepartment of Dermatology, IRCCS Azienda Universitaria Ospedaliera San Martino-IST, Genoa, Italy.
Francesco DragoDepartment of Dermatology, IRCCS Azienda Universitaria Ospedaliera San Martino-IST, Genoa, Italy.
Sheila A LukehartDepartment of Medicine, Division of Allergy and Infectious Diseases, University of Washington, Seattle, Washington, USA Department of Global Health, University of Washington, Seattle, Washington, USA.
Arturo Centurion-LaraDepartment of Medicine, Division of Allergy and Infectious Diseases, University of Washington, Seattle, Washington, USA.
University of Washington · USOspedale Policlinico San Martino · ITSouthern Medical University · CN

Funding

University of Washington Medical Scientist Training Program: MD/PhDT32GM007266 · NIGMS · UNIVERSITY OF WASHINGTON · PI HORWITZ, MARSHALL S. · 1985 to 2023
$30.4M
VENEREAL DISEASET32AI007140 · NIAID · UNIVERSITY OF WASHINGTON · PI Julia Cook Dombrowski · 1985 to 2026
$19.4M
Immunology and Infectious Diseases Training ProgramT32AI060519 · NIAID · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI MARK H KAPLAN · 2004 to 2026
$6.0M
TREPONEMA PALLIDUM PATHOGENESIS ASSOCIATED MOLECULESR01AI042143 · NIAID · UNIVERSITY OF WASHINGTON · PI LUKEHART, SHEILA A. · 1998 to 2015
$5.4M
Project 4: Antigenic variation of TprKR01AI063940 · NIAID · UNIVERSITY OF WASHINGTON · PI LUKEHART, SHEILA A. · 2004 to 2013
$3.3M
NIAID NIH HHS R01 AI042143NIAID NIH HHS R01AI042143NIAID NIH HHS R01 AI063940NIAID NIH HHS R01AI63940NIAID NIH HHS T32 AI007140NIGMS NIH HHS T32 GM007266OPHPR CDC HHS U90 TP000126
6 · The paper itself

Abstract

An effective mechanism for introduction of phenotypic diversity within a bacterial population exploits changes in the length of repetitive DNA elements located within gene promoters. This phenomenon, known as phase variation, causes rapid activation or silencing of gene expression and fosters bacterial adaptation to new or changing environments. Phase variation often occurs in surface-exposed proteins, and in Treponema pallidum subsp. pallidum, the syphilis agent, it was reported to affect transcription of three putative outer membrane protein (OMP)-encoding genes. When the T. pallidum subsp. pallidum Nichols strain genome was initially annotated, the TP0126 open reading frame was predicted to include a poly(G) tract and did not appear to have a predicted signal sequence that might suggest the possibility of its being an OMP. Here we show that the initial annotation was incorrect, that this poly(G) is instead located within the TP0126 promoter, and that it varies in length in vivo during experimental syphilis. Additionally, we show that TP0126 transcription is affected by changes in the poly(G) length consistent with regulation by phase variation. In silico analysis of the TP0126 open reading frame based on the experimentally identified transcriptional start site shortens this hypothetical protein by 69 amino acids, reveals a predicted cleavable signal peptide, and suggests structural homology with the OmpW family of porins. Circular dichroism of recombinant TP0126 supports structural homology to OmpW. Together with the evidence that TP0126 is fully conserved among T. pallidum subspecies and strains, these data suggest an important role for TP0126 in T. pallidum biology and syphilis pathogenesis.

Indexed as

Transcription, GeneticAnimalsBacterial Outer Membrane ProteinsBase SequenceGene Expression Regulation, BacterialGuanosineHumansImmunity, HumoralModels, MolecularProtein ConformationRabbitsRecombinant ProteinsSyphilisTranscription Initiation SiteTreponema pallidumBacterial Outer Membrane ProteinsGuanosineRecombinant Proteins

Identifiers

PMID25802057
PMCPMC4432754
OpenAlexW2167779760

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.