Evidence map›Paper›PMID 25801974›Full record

ArticleScientific reports2015

Structure and function of a Clostridium difficile sortase enzyme.

Christopher J Chambers, April K Roberts, Clifford C Shone, K Ravi Acharya

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 26 citations in OpenAlex.

  1. Rising prevalence and drug resistance ofFrontiers in cellular and infection microbiology · 2024
    Review
  2. Article
  3. Review
  4. Article
  5. Functional analysis ofThe Journal of biological chemistry · 2020
    Article
  6. Article
  7. Article
  8. Pilus biogenesis of Gram-positive bacteria: Roles of sortases and implications for assembly.Protein science : a publication of the Protein Society · 2017
    Review
  9. Structure and specificity of a new class of CaThe Journal of biological chemistry · 2017
    Article
  10. Sortase Transpeptidases: Structural Biology and Catalytic Mechanism.Advances in protein chemistry and structural biology · 2017
    Review
  11. Review
  12. Structural Insights into Substrate Recognition byFrontiers in cellular and infection microbiology · 2016
    Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Christopher J Chambers1] Public Health England, Porton Down, Salisbury SP4 0JG, UK [2] Department of Biology and Biochemistry, University of Bath, Claverton Down, Bath BA2 7AY, UK.
April K RobertsPublic Health England, Porton Down, Salisbury SP4 0JG, UK.
Clifford C ShonePublic Health England, Porton Down, Salisbury SP4 0JG, UK.
K Ravi AcharyaDepartment of Biology and Biochemistry, University of Bath, Claverton Down, Bath BA2 7AY, UK.
Public Health England · GBUniversity of Bath · GB

Funding

Medical Research Council MK/K027123/1Medical Research Council MR/K027123/1
6 · The paper itself

Abstract

Sortase enzymes are responsible for covalent anchoring of specific proteins to the peptidoglycan of the cell wall of gram-positive bacteria. In some gram-positive bacteria (e.g. Staphylococcus aureus), sortases have been found to be essential for pathogenesis and their inhibitors are under development as potential novel therapeutics. Here we provide the first report on the structural characterisation of the C. difficile sortase. An active site mutant was crystallised and its structure determined to 2.55 Å by X-ray diffraction to provide structural insight into its catalytic mechanism. In order to elucidate the role of the sortase in the cell wall biogenesis, a C. difficile sortase knockout strain was constructed by intron mutagenesis. Characterisation of this mutant led to the discovery that the putative adhesin CD0386 is anchored to the peptidoglycan of C. difficile by the sortase SrtB and that an SPKTG peptide motif is involved in the transpeptidation reaction with the C. difficile peptidoglycan. In an animal model for C. difficile infection, the SrtB mutant caused disease at a similar rate of onset as the wild type strain. In conclusion, our detailed study shows that the SrtB enzyme from C. difficile does not play an essential role in pathogenesis.

Indexed as

Crystallography, X-RayAmino Acid MotifsAminoacyltransferasesBacterial ProteinsCatalytic DomainCell WallClostridioides difficileCysteine EndopeptidasesHumansMutationProtein ConformationProtein Structure, TertiaryStaphylococcal InfectionsStaphylococcus aureusX-Ray DiffractionAminoacyltransferasesBacterial ProteinsCysteine Endopeptidasessortase B

Identifiers

PMID25801974
PMCPMC4371152
OpenAlexW2061135224

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.