Evidence map›Paper›PMID 25800674›Full record

ArticleGenome research2015

Sumoylation of Rap1 mediates the recruitment of TFIID to promote transcription of ribosomal protein genes.

Pierre Chymkowitch, Aurélie P Nguéa, Håvard Aanes, Christian J Koehler, Bernd Thiede, Susanne Lorenz, Leonardo A Meza-Zepeda, Arne Klungland, Jorrit M Enserink

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Genome research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 57 citations in OpenAlex.

  1. Article
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  9. Review
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  13. Article
  14. Histone sumoylation and chromatin dynamics.Nucleic acids research · 2021
    Review
  15. Review
  16. Article
  17. Article
  18. SUMO and cellular adaptive mechanisms.Experimental & molecular medicine · 2020
    Review
  19. Article
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Pierre ChymkowitchInstitute of Microbiology, Clinic for Diagnostics and Intervention, Oslo University Hospital, N-0027 Oslo, Norway; University of Oslo, 0316 Oslo, Norway;
Aurélie P NguéaInstitute of Microbiology, Clinic for Diagnostics and Intervention, Oslo University Hospital, N-0027 Oslo, Norway; University of Oslo, 0316 Oslo, Norway;
Håvard AanesInstitute of Microbiology, Clinic for Diagnostics and Intervention, Oslo University Hospital, N-0027 Oslo, Norway; University of Oslo, 0316 Oslo, Norway;
Christian J KoehlerThe Biotechnology Centre of Oslo, University of Oslo, 0349 Oslo, Norway;
Bernd ThiedeThe Biotechnology Centre of Oslo, University of Oslo, 0349 Oslo, Norway;
Susanne LorenzDepartment of Tumor Biology, The Norwegian Radium Hospital, and Genomics Core Facility, Oslo University Hospital, NO-0310 Oslo, Norway.
Leonardo A Meza-ZepedaDepartment of Tumor Biology, The Norwegian Radium Hospital, and Genomics Core Facility, Oslo University Hospital, NO-0310 Oslo, Norway.
Arne KlunglandInstitute of Microbiology, Clinic for Diagnostics and Intervention, Oslo University Hospital, N-0027 Oslo, Norway; University of Oslo, 0316 Oslo, Norway;
Jorrit M EnserinkInstitute of Microbiology, Clinic for Diagnostics and Intervention, Oslo University Hospital, N-0027 Oslo, Norway; University of Oslo, 0316 Oslo, Norway;
Oslo University Hospital · NOUniversity of Oslo · NO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Transcription factors are abundant Sumo targets, yet the global distribution of Sumo along the chromatin and its physiological relevance in transcription are poorly understood. Using Saccharomyces cerevisiae, we determined the genome-wide localization of Sumo along the chromatin. We discovered that Sumo-enriched genes are almost exclusively involved in translation, such as tRNA genes and ribosomal protein genes (RPGs). Genome-wide expression analysis showed that Sumo positively regulates their transcription. We also discovered that the Sumo consensus motif at RPG promoters is identical to the DNA binding motif of the transcription factor Rap1. We demonstrate that Rap1 is a molecular target of Sumo and that sumoylation of Rap1 is important for cell viability. Furthermore, Rap1 sumoylation promotes recruitment of the basal transcription machinery, and sumoylation of Rap1 cooperates with the target of rapamycin kinase complex 1 (TORC1) pathway to promote RPG transcription. Strikingly, our data reveal that sumoylation of Rap1 functions in a homeostatic feedback loop that sustains RPG transcription during translational stress. Taken together, Sumo regulates the cellular translational capacity by promoting transcription of tRNA genes and RPGs.

Indexed as

SumoylationChromatinGenetic Association StudiesPromoter Regions, Geneticrap1 GTP-Binding ProteinsRNA, FungalSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSequence Analysis, RNASignal TransductionSUMO-1 ProteinTranscription FactorsTranscription Factor TFIIDChromatinrap1 GTP-Binding ProteinsRNA, FungalSaccharomyces cerevisiae ProteinsSUMO-1 ProteinTORC1 protein complex, S cerevisiaeTranscription FactorsTranscription Factor TFIID

Identifiers

PMID25800674
PMCPMC4448685
OpenAlexW2170372170

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.