Evidence map›Paper›PMID 25800552›Full record

ArticleStructure (London, England : 1993)2015

Structural mechanism for the regulation of HCN ion channels by the accessory protein TRIP8b.

Hannah A DeBerg, John R Bankston, Joel C Rosenbaum, Peter S Brzovic, William N Zagotta, Stefan Stoll

Open access · bronzeAbstract read
In one paragraph

Article in Structure (London, England : 1993), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
  2. Protein Modeling with DEER Spectroscopy.Annual review of biophysics · 2025
    Review
  3. Article
  4. Modeling of Cu(II)-based protein spin labels using rotamer libraries.Physical chemistry chemical physics : PCCP · 2024
    Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. IProgress in biophysics and molecular biology · 2021
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Hannah A DeBergDepartment of Chemistry, University of Washington, Seattle, WA 98195, USA; Department of Physiology and Biophysics, University of Washington, Seattle, WA 98195, USA.
John R BankstonDepartment of Physiology and Biophysics, University of Washington, Seattle, WA 98195, USA.
Joel C RosenbaumDepartment of Biochemistry, University of Washington, Seattle, WA 98195, USA.
Peter S BrzovicDepartment of Biochemistry, University of Washington, Seattle, WA 98195, USA.
William N ZagottaDepartment of Physiology and Biophysics, University of Washington, Seattle, WA 98195, USA.
Stefan StollDepartment of Chemistry, University of Washington, Seattle, WA 98195, USA. Electronic address: stst@uw.edu.
University of Washington · US

Funding

Interdisciplinary Tranining in Cancer ResearchT32CA080416 · NCI · UNIVERSITY OF WASHINGTON · PI STODDARD, BARRY L. · 1998 to 2023
$9.7M
Resource for Biocomputing Visualization and InformaticsP41GM103311 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 2012 to 2017
$8.2M
GATING MECHANISMS OF RETINAL ROD CGMP-ACTIVATED CHANNELSR01EY010329 · NEI · UNIVERSITY OF WASHINGTON · PI ZAGOTTA, WILLIAM N · 1994 to 2023
$7.7M
Unconventional Interactions of Human Ubiquitin Conjugating EnzymesR01GM098503 · NIGMS · UNIVERSITY OF WASHINGTON · PI BRZOVIC, PETER S · 2012 to 2016
$1.5M
Molecular mechanisms for regulation of HCN channels by TRIP8b subunitsR21NS074053 · NINDS · UNIVERSITY OF WASHINGTON · PI ZAGOTTA, WILLIAM N · 2011 to 2012
$429k
Function and regulation of acid-sensing ion channels in corneal neuronsK99EY024267 · NEI · UNIVERSITY OF WASHINGTON · PI BANKSTON, JOHN · 2014 to 2015
$181k
Mechanisms of HCN regulation by accessory subunit Trip8b using fluorescence and eF32NS074545 · NINDS · UNIVERSITY OF WASHINGTON · PI BANKSTON, JOHN · 2011 to 2013
$159k
NCI NIH HHS 5T32CA080416-15NCI NIH HHS T32 CA080416NEI NIH HHS EY010329NEI NIH HHS K99 EY024267NEI NIH HHS R01 EY010329NIGMS NIH HHS P41 GM103311NIGMS NIH HHS P41-GM103311NIGMS NIH HHS R01 GM098501NIGMS NIH HHS R01 GM098503NINDS NIH HHS F32 NS074545NINDS NIH HHS NS074545NINDS NIH HHS R21 NS074053
6 · The paper itself

Abstract

Hyperpolarization-activated cyclic nucleotide-gated (HCN) ion channels underlie the cationic Ih current present in many neurons. The direct binding of cyclic AMP to HCN channels increases the rate and extent of channel opening and results in a depolarizing shift in the voltage dependence of activation. TRIP8b is an accessory protein that regulates the cell surface expression and dendritic localization of HCN channels and reduces the cyclic nucleotide dependence of these channels. Here, we use electron paramagnetic resonance (EPR) to show that TRIP8b binds to the apo state of the cyclic nucleotide binding domain (CNBD) of HCN2 channels without changing the overall domain structure. With EPR and nuclear magnetic resonance, we locate TRIP8b relative to the HCN channel and identify the binding interface on the CNBD. These data provide a structural framework for understanding how TRIP8b regulates the cyclic nucleotide dependence of HCN channels.

Indexed as

Amino Acid SequenceAnimalsBinding SitesHyperpolarization-Activated Cyclic Nucleotide-Gated ChannelsMembrane ProteinsMiceMolecular Sequence DataPeroxinsPotassium ChannelsProtein BindingXenopusHcn2 protein, mouseHyperpolarization-Activated Cyclic Nucleotide-Gated ChannelsMembrane ProteinsPeroxinsPex5l protein, mousePotassium Channels

Identifiers

PMID25800552
PMCPMC4394039
OpenAlexW2048506141

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.