Evidence map›Paper›PMID 25799109›Full record

ArticlePloS one2015

Diversity, metabolic properties and arsenic mobilization potential of indigenous bacteria in arsenic contaminated groundwater of West Bengal, India.

Dhiraj Paul, Sufia K Kazy, Ashok K Gupta, Taraknath Pal, Pinaki Sar

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
8.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 69 citations in OpenAlex.

  1. Article
  2. Review
  3. Culture-dependent study of arsenic-reducing bacteria in deep aquatic sediments of Bengal Delta.Environmental science and pollution research international · 2021
    Article
  4. Article
  5. Review
  6. Article
  7. Groundwater Arsenic Distribution in India by Machine Learning Geospatial Modeling.International journal of environmental research and public health · 2020
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Low-Abundance Members of theFrontiers in microbiology · 2018
    Article
  14. Article
  15. Article
  16. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Dhiraj PaulDepartment of Biotechnology, Indian Institute of Technology, Kharagpur, 721302, India.
Sufia K KazyDepartment of Biotechnology, National Institute of Technology, Durgapur, 713209 India.
Ashok K GuptaDepartment of Civil Engineering, Indian Institute of Technology, Kharagpur, 721302, India.
Taraknath PalCentral Headquarters, Geological Survey of India, Kolkata, 700016, India.
Pinaki SarDepartment of Biotechnology, Indian Institute of Technology, Kharagpur, 721302, India.
Indian Institute of Technology Kharagpur · INGeological Survey of India · INNational Institute of Technology Durgapur · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Arsenic (As) mobilization in alluvial aquifers is caused by a complex interplay of hydro-geo-microbiological activities. Nevertheless, diversity and biogeochemical significance of indigenous bacteria in Bengal Delta Plain are not well documented. We have deciphered bacterial community compositions and metabolic properties in As contaminated groundwater of West Bengal to define their role in As mobilization. Groundwater samples showed characteristic high As, low organic carbon and reducing property. Culture-independent and -dependent analyses revealed presence of diverse, yet near consistent community composition mostly represented by genera Pseudomonas, Flavobacterium, Brevundimonas, Polaromonas, Rhodococcus, Methyloversatilis and Methylotenera. Along with As-resistance and -reductase activities, abilities to metabolize a wide range carbon substrates including long chain and polyaromatic hydrocarbons and HCO3, As3+ as electron donor and As5+/Fe3+ as terminal electron acceptor during anaerobic growth were frequently observed within the cultivable bacteria. Genes encoding cytosolic As5+ reductase (arsC) and As3+ efflux/transporter [arsB and acr3(2)] were found to be more abundant than the dissimilatory As5+ reductase gene arrA. The observed metabolic characteristics showed a good agreement with the same derived from phylogenetic lineages of constituent populations. Selected bacterial strains incubated anaerobically over 300 days using natural orange sand of Pleistocene aquifer showed release of soluble As mostly as As3+ along with several other elements (Al, Fe, Mn, K, etc.). Together with the production of oxalic acid within the biotic microcosms, change in sediment composition and mineralogy indicated dissolution of orange sand coupled with As/Fe reduction. Presence of arsC gene, As5+ reductase activity and oxalic acid production by the bacteria were found to be closely related to their ability to mobilize sediment bound As. Overall observations suggest that indigenous bacteria in oligotrophic groundwater possess adequate catabolic ability to mobilize As by a cascade of reactions, mostly linked to bacterial necessity for essential nutrients and detoxification.

Indexed as

ArsenicBacteriaBacterial ProteinsCarbonGenetic VariationGroundwaterIndiaMetalsPolymerase Chain ReactionRNA, BacterialRNA, Ribosomal, 16SWater PollutantsArsenicBacterial ProteinsCarbonMetalsRNA, BacterialRNA, Ribosomal, 16SWater Pollutants

Identifiers

PMID25799109
PMCPMC4370401
OpenAlexW2010180302

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.