Evidence map›Paper›PMID 25798950›Full record

ArticleJournal of medicinal chemistry2015

Hotspots in an obligate homodimeric anticancer target. Structural and functional effects of interfacial mutations in human thymidylate synthase.

Outi M H Salo-Ahen, Anna Tochowicz, Cecilia Pozzi, Daniela Cardinale, Stefania Ferrari, Yap Boum, Stefano Mangani, Robert M Stroud, Puneet Saxena, Hannu Myllykallio and 3 more

Open access · greenAbstract read
In one paragraph

Article in Journal of medicinal chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 26 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Structural Comparison ofMolecules (Basel, Switzerland) · 2019
    Article
  11. Article
  12. Noncovalent Intermediate of Thymidylate Synthase: Fact or Fiction?Journal of the American Chemical Society · 2016
    Article
  13. Article
  14. Substrate channeling between the human dihydrofolate reductase and thymidylate synthase.Protein science : a publication of the Protein Society · 2016
    Article
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 6 institutions in 4 countries.

Outi M H Salo-Ahen†Molecular and Cellular Modeling Group, Heidelberg Institute for Theoretical Studies, 69118 Heidelberg, Germany.
Anna Tochowicz‡Department of Biochemistry and Biophysics, University of California-San Francisco, San Francisco, California 94158, United States.
Cecilia Pozzi§Department of Biotechnology, Chemistry and Pharmacy, University of Siena, 53100 Siena, Italy.
Daniela Cardinale∥Department of Life Sciences, University of Modena and Reggio Emilia, 41125 Modena, Italy.
Stefania Ferrari∥Department of Life Sciences, University of Modena and Reggio Emilia, 41125 Modena, Italy.
Yap Boum⊥Ecole Polytechnique, CNRS UMR7645, INSERM U696, 91128 Palaiseau, France.
Stefano Mangani§Department of Biotechnology, Chemistry and Pharmacy, University of Siena, 53100 Siena, Italy.
Robert M Stroud‡Department of Biochemistry and Biophysics, University of California-San Francisco, San Francisco, California 94158, United States.
Puneet Saxena∥Department of Life Sciences, University of Modena and Reggio Emilia, 41125 Modena, Italy.
Hannu Myllykallio⊥Ecole Polytechnique, CNRS UMR7645, INSERM U696, 91128 Palaiseau, France.
Maria Paola Costi∥Department of Life Sciences, University of Modena and Reggio Emilia, 41125 Modena, Italy.
Glauco Ponterini∥Department of Life Sciences, University of Modena and Reggio Emilia, 41125 Modena, Italy.
Rebecca C Wade†Molecular and Cellular Modeling Group, Heidelberg Institute for Theoretical Studies, 69118 Heidelberg, Germany.
University of Modena and Reggio Emilia · ITHeidelberg Institute for Theoretical Studies · DEUniversity of California, San Francisco · USUniversity of Siena · ITCentre National de la Recherche Scientifique · FRInserm · FR

Funding

STRUCTURE/FUNCTION OF PROTEINS AT MOLECULAR LEVELR01GM024485 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STROUD, ROBERT M · 1985 to 2024
$7.5M
Molecular Basis for Transmembrane Conduction & SignalingR37GM024485 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STROUD, ROBERT M · 2007 to 2016
$4.7M
NIGMS NIH HHS GM-24485NIGMS NIH HHS R01 GM024485NIGMS NIH HHS R37 GM024485
6 · The paper itself

Abstract

Human thymidylate synthase (hTS), a target for antiproliferative drugs, is an obligate homodimer. Single-point mutations to alanine at the monomer-monomer interface may enable the identification of specific residues that delineate sites for drugs aimed at perturbing the protein-protein interactions critical for activity. We computationally identified putative hotspot residues at the interface and designed mutants to perturb the intersubunit interaction. Dimer dissociation constants measured by a FRET-based assay range from 60 nM for wild-type hTS up to about 1 mM for single-point mutants and agree with computational predictions of the effects of these mutations. Mutations that are remote from the active site retain full or partial activity, although the substrate KM values were generally higher and the dimer was less stable. The lower dimer stability of the mutants can facilitate access to the dimer interface by small molecules and thereby aid the design of inhibitors that bind at the dimer interface.

Indexed as

Antineoplastic AgentsEnzyme ActivationEnzyme InhibitorsHumansMolecular Docking SimulationNeoplasmsPoint MutationProtein ConformationProtein MultimerizationThymidylate SynthaseAntineoplastic AgentsEnzyme InhibitorsThymidylate Synthase

Identifiers

PMID25798950
PMCPMC4634673
OpenAlexW2020574745

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.