Evidence map›Paper›PMID 25798947›Full record

ArticlePloS one2015

Whole exome sequencing identifies mutations in Usher syndrome genes in profoundly deaf Tunisian patients.

Zied Riahi, Crystel Bonnet, Rim Zainine, Saida Lahbib, Yosra Bouyacoub, Rym Bechraoui, Jihène Marrakchi, Jean-Pierre Hardelin, Malek Louha, Leila Largueche and 6 more

Abstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Genetics of prelingual isolated deafness and Usher syndrome in the Maghreb and Jordan: Harnessing the potential of homozygosity.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Genetics and genomic medicine in Tunisia.Molecular genetics & genomic medicine · 2018
    Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Genetics of Hearing Loss: Syndromic.Otolaryngologic clinics of North America · 2015
    Review
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Zied RiahiInstitut Pasteur de Tunis, LR11IPT05, Biomedical Genomics and Oncogenetics Laboratory, 1002, Tunis, Tunisia; Faculté des Sciences de Tunis, Université de Tunis El Manar, 2092 El Manar I Tunis, Tunis, Tunisia.
Crystel BonnetInstitut de la Vision, INSERM UMRS 1120, UPMC- Paris 6, Paris, France.
Rim ZainineLa Rabta Hospital, Otorhinolaryngology Diseases, Tunis, Tunisia.
Saida LahbibInstitut Pasteur de Tunis, LR11IPT05, Biomedical Genomics and Oncogenetics Laboratory, 1002, Tunis, Tunisia.
Yosra BouyacoubInstitut Pasteur de Tunis, LR11IPT05, Biomedical Genomics and Oncogenetics Laboratory, 1002, Tunis, Tunisia; Université de Monastir, Institut Supérieur de Biotechnologie, Monastir, Tunisia.
Rym BechraouiLa Rabta Hospital, Otorhinolaryngology Diseases, Tunis, Tunisia.
Jihène MarrakchiLa Rabta Hospital, Otorhinolaryngology Diseases, Tunis, Tunisia.
Jean-Pierre HardelinInstitut Pasteur, Unité de Génétique et Physiologie de l'Audition, Paris, France.
Malek LouhaLaboratoire de Biochimie et de Biologie Moléculaire, Hôpital Armand Trousseau, APHP, Paris, France.
Leila LarguecheDepartment B of Ophthalmology, Hedi Rais Institute of Ophthalmology, Tunis, Tunisia.
Salim Ben YahiaUniversite de Monastir, Faculty of Medicine, Fattouma Bourguiba University Hospital, Department of Ophthalmology, 5000, Monastir, Tunisia.
Moncef KheirallahUniversite de Monastir, Faculty of Medicine, Fattouma Bourguiba University Hospital, Department of Ophthalmology, 5000, Monastir, Tunisia.
Leila ElmatriDepartment B of Ophthalmology, Hedi Rais Institute of Ophthalmology, Tunis, Tunisia.
Ghazi BesbesLa Rabta Hospital, Otorhinolaryngology Diseases, Tunis, Tunisia.
Sonia AbdelhakInstitut Pasteur de Tunis, LR11IPT05, Biomedical Genomics and Oncogenetics Laboratory, 1002, Tunis, Tunisia.
Christine PetitInstitut de la Vision, INSERM UMRS 1120, UPMC- Paris 6, Paris, France; Institut Pasteur, Unité de Génétique et Physiologie de l'Audition, Paris, France; Collège de France, Paris, France.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Usher syndrome (USH) is an autosomal recessive disorder characterized by combined deafness-blindness. It accounts for about 50% of all hereditary deafness blindness cases. Three clinical subtypes (USH1, USH2, and USH3) are described, of which USH1 is the most severe form, characterized by congenital profound deafness, constant vestibular dysfunction, and a prepubertal onset of retinitis pigmentosa. We performed whole exome sequencing in four unrelated Tunisian patients affected by apparently isolated, congenital profound deafness, with reportedly normal ocular fundus examination. Four biallelic mutations were identified in two USH1 genes: a splice acceptor site mutation, c.2283-1G>T, and a novel missense mutation, c.5434G>A (p.Glu1812Lys), in MYO7A, and two previously unreported mutations in USH1G, i.e. a frameshift mutation, c.1195_1196delAG (p.Leu399Alafs*24), and a nonsense mutation, c.52A>T (p.Lys18*). Another ophthalmological examination including optical coherence tomography actually showed the presence of retinitis pigmentosa in all the patients. Our findings provide evidence that USH is under-diagnosed in Tunisian deaf patients. Yet, early diagnosis of USH is of utmost importance because these patients should undergo cochlear implant surgery in early childhood, in anticipation of the visual loss.

Indexed as

ExomeGenome-Wide Association StudyHigh-Throughput Nucleotide SequencingMutationConnexin 26ConnexinsDeafnessFamilyFemaleGenotypeHumansMaleMyosinsPedigreePhenotypeRetinaConnexin 26ConnexinsMyosins

Identifiers

PMID25798947
PMCPMC4370767

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.