ArticleScientific reports2015
Identification of domestication-related loci associated with flowering time and seed size in soybean with the RAD-seq genotyping method.
Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.
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36 citing papers in PubMed, 71 citations in OpenAlex.
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- Identification of QTNs, QTN-by-environment interactions, and their candidate genes for salt tolerance related traits in soybean.BMC plant biology · 2024Article
- Improving power of genome-wide association studies via transforming ordinal phenotypes into continuous phenotypes.Frontiers in plant science · 2023Article
- The Key to the Future Lies in the Past: Insights from Grain Legume Domestication and Improvement Should Inform Future Breeding Strategies.Plant & cell physiology · 2022Review
- Construction of Chromosome Segment Substitution Lines and Inheritance of Seed-Pod Characteristics in Wild Soybean.Frontiers in plant science · 2022Article
- Fine mapping and candidate gene analysis of proportion of four-seed pods by soybean CSSLs.Frontiers in plant science · 2022Article
- Identification of QTN-by-environment interactions and their candidate genes for soybean seed oil-related traits using 3VmrMLM.Frontiers in plant science · 2022Article
- Domestication and improvement genes reveal the differences of seed size- and oil-related traits in soybean domestication and improvement.Computational and structural biotechnology journal · 2022Article
- The CCCH zinc finger family of soybean (Glycine max L.): genome-wide identification, expression, domestication, GWAS and haplotype analysis.BMC genomics · 2021Article
- Identification of QTNs and their candidate genes for flowering time and plant height in soybean using multi-locus genome-wide association studies.Molecular breeding : new strategies in plant improvement · 2021Article
- Genetic Mapping by Sequencing More Precisely Detects Loci Responsible for Anaerobic Germination Tolerance in Rice.Plants (Basel, Switzerland) · 2021Article
- Genetic Dissection of a Precocious Phenotype in Male Tiger Pufferfish (Takifugu rubripes) using Genotyping by Random Amplicon Sequencing, Direct (GRAS-Di).Marine biotechnology (New York, N.Y.) · 2021Article
- Identification and Functional Verification of Cold Tolerance Genes in Spring Maize Seedlings Based on a Genome-Wide Association Study and Quantitative Trait Locus Mapping.Frontiers in plant science · 2021Article
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- Identification of loci controlling adaptation in Chinese soya bean landraces via a combination of conventional and bioclimatic GWAS.Plant biotechnology journal · 2020Article
- Global Role of Crop Genomics in the Face of Climate Change.Frontiers in plant science · 2020Review
- Article
- Identification of genetic loci and candidate genes related to soybean flowering through genome wide association study.BMC genomics · 2019Article
- Core set construction and association analysis of Pinus massoniana from Guangdong province in southern China using SLAF-seq.Scientific reports · 2019Article
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Authors and funding
16 authors at 6 institutions in 3 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Flowering time and seed size are traits related to domestication. However, identification of domestication-related loci/genes of controlling the traits in soybean is rarely reported. In this study, we identified a total of 48 domestication-related loci based on RAD-seq genotyping of a natural population comprising 286 accessions. Among these, four on chromosome 12 and additional two on chromosomes 11 and 15 were associated with flowering time, and four on chromosomes 11 and 16 were associated with seed size. Of the five genes associated with flowering time and the three genes associated with seed size, three genes Glyma11g18720, Glyma11g15480 and Glyma15g35080 were homologous to Arabidopsis genes, additional five genes were found for the first time to be associated with these two traits. Glyma11g18720 and Glyma05g28130 were co-expressed with five genes homologous to flowering time genes in Arabidopsis, and Glyma11g15480 was co-expressed with 24 genes homologous to seed development genes in Arabidopsis. This study indicates that integration of population divergence analysis, genome-wide association study and expression analysis is an efficient approach to identify candidate domestication-related genes.
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