Evidence map›Paper›PMID 25797297›Full record

ArticleJournal of veterinary science2015

Helicobacter apodemus sp. nov., a new Helicobacter species identified from the gastrointestinal tract of striped field mice in Korea.

Woo Jin Jeon, Hee-Jin Dong, Jae Hoon Shin, Il Yong Kim, Hungwui Ho, Seung Hyun Oh, Young Min Yoon, Yang-Kyu Choi, Jun Gyo Suh, Ki-Hoan Nam and 3 more

Abstract read
In one paragraph

Article in Journal of veterinary science, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. A Tripartite Efflux System Affects Flagellum Stability inInternational journal of molecular sciences · 2022
    Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Woo Jin JeonLaboratory of Developmental Biology and Genomics, College of Veterinary Medicine, BIO-MAX Institute, Program for Cancer Biology, and Interdisciplinary Program for Bioinformatics, BK21Plus Program fo.
Hee-Jin DongLaboratory of Veterinary Public Health, College of Veterinary Medicine, BIO-MAX Institute, Program for Cancer Biology, and Interdisciplinary Program for Bioinformatics, BK21Plus Program for Creative.
Jae Hoon ShinLaboratory of Developmental Biology and Genomics, College of Veterinary Medicine, BIO-MAX Institute, Program for Cancer Biology, and Interdisciplinary Program for Bioinformatics, BK21Plus Program fo.
Il Yong KimLaboratory of Developmental Biology and Genomics, College of Veterinary Medicine, BIO-MAX Institute, Program for Cancer Biology, and Interdisciplinary Program for Bioinformatics, BK21Plus Program fo.
Hungwui HoLaboratory of Veterinary Public Health, College of Veterinary Medicine, BIO-MAX Institute, Program for Cancer Biology, and Interdisciplinary Program for Bioinformatics, BK21Plus Program for Creative.
Seung Hyun OhCollege of Pharmacy, Gachon University, Incheon 21936, Korea.
Young Min YoonCollege of Veterinary Medicine, Jeju National University, Jeju 63241, Korea.
Yang-Kyu ChoiCollege of Veterinary Medicine, Konkuk University, Seoul 05029, Korea.
Jun Gyo SuhDepartment of Medical Genetics, College of Medicine, Hallym University, Chuncheon 24252, Korea.
Ki-Hoan NamBiomedical Mouse Resource Center, Korea Research Institute for Bioscience and Biotechnology, Ochang 34141, Korea.
Hyoung-Chin KimBiomedical Mouse Resource Center, Korea Research Institute for Bioscience and Biotechnology, Ochang 34141, Korea.
Seongbeom ChoLaboratory of Veterinary Public Health, College of Veterinary Medicine, BIO-MAX Institute, Program for Cancer Biology, and Interdisciplinary Program for Bioinformatics, BK21Plus Program for Creative.
Je Kyung SeongLaboratory of Developmental Biology and Genomics, College of Veterinary Medicine, BIO-MAX Institute, Program for Cancer Biology, and Interdisciplinary Program for Bioinformatics, BK21Plus Program fo.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A novel Helicobacter species was identified from the gastrointestinal tract of the Korean striped field mouse (Apodemus agrarius). Biochemical testing, ultrastructure characterization, and 16S rRNA gene sequence analysis suggested that this bacterium represents a distinct taxon. The bacterium was positive for urease activity, susceptible to cephalothin and nalidixic acid, and weakly positive for oxidase and catalase activity. Electron microscopy revealed that the bacterium has spirally curved rod morphology with singular bipolar nonsheathed flagella. Genotypically, the isolated bacterial strains (YMRC 000215, YMRC 000216, and YMRC 000419) were most closely related to a reference strain of Helicobacter mesocricetorum (97.25%, 97.32%, and 97.03% 16S rRNA sequence similarities, respectively). The 16S rRNA sequences of these strains were deposited into GenBank under accession numbers AF284754, AY009129, and AY009130, respectively. We propose the name Helicobacter apodemus for this novel species.

Indexed as

MurinaeAnimalsDNA, BacterialFemaleGastrointestinal TractHelicobacterHelicobacter InfectionsMaleMicroscopy, Electron, TransmissionMolecular Sequence DataPhylogenyRepublic of KoreaRNA, Ribosomal, 16SRodent DiseasesDNA, BacterialRNA, Ribosomal, 16S16S rRNAApodemus agrariusHelicobacter apodemusstriped field mouse

Identifiers

PMID25797297
PMCPMC4701740

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.