Evidence map›Paper›PMID 25795785›Full record

ArticleThe Journal of biological chemistry2015

A Proteomic Strategy Identifies Lysine Methylation of Splicing Factor snRNP70 by the SETMAR Enzyme.

Scott M Carlson, Kaitlyn E Moore, Saumya M Sankaran, Nicolas Reynoird, Joshua E Elias, Or Gozani

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 37 citations in OpenAlex.

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  13. Histone lysine methyltransferases in biology and disease.Nature structural & molecular biology · 2019
    Review
  14. Review
  15. Lysine methylation signaling of non-histone proteins in the nucleus.Cellular and molecular life sciences : CMLS · 2019
    Review
  16. Article
  17. Article
  18. Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Scott M CarlsonFrom the Department of Biology and scottmc@stanford.edu.
Kaitlyn E MooreFrom the Department of Biology and Department of Chemical and Systems Biology, School of Medicine, Stanford University, Stanford, California 94305.
Saumya M SankaranFrom the Department of Biology and.
Nicolas ReynoirdFrom the Department of Biology and.
Joshua E EliasDepartment of Chemical and Systems Biology, School of Medicine, Stanford University, Stanford, California 94305.
Or GozaniFrom the Department of Biology and ogozani@stanfordedu.
Stanford University · US

Funding

Leveraging innovative technologies in basic and clinical cancer researchT32CA009302 · NCI · STANFORD UNIVERSITY · PI LAURA D ATTARDI, Aaron M Newman · 1985 to 2026
$19.1M
Function of PHD Domain Proteins in Chromatin RegulationR01GM079641 · NIGMS · STANFORD UNIVERSITY · PI GOZANI, OR P. · 2007 to 2020
$4.5M
NIGMS NIH HHS R01 GM079641
6 · The paper itself

Abstract

The lysine methyltransferase (KMT) SETMAR is implicated in the response to and repair of DNA damage, but its molecular function is not clear. SETMAR has been associated with dimethylation of histone H3 lysine 36 (H3K36) at sites of DNA damage. However, SETMAR does not methylate H3K36 in vitro. This and the observation that SETMAR is not active on nucleosomes suggest that H3K36 methylation is not a physiologically relevant activity. To identify potential non-histone substrates, we utilized a strategy on the basis of quantitative proteomic analysis of methylated lysine. Our approach identified lysine 130 of the mRNA splicing factor snRNP70 as a SETMAR substrate in vitro, and we show that the enzyme primarily generates monomethylation at this position. Furthermore, we show that SETMAR methylates snRNP70 Lys-130 in cells. Because snRNP70 is a key early regulator of 5' splice site selection, our results suggest a model in which methylation of snRNP70 by SETMAR regulates constitutive and/or alternative splicing. In addition, the proteomic strategy described here is broadly applicable and is a promising route for large-scale mapping of KMT substrates.

Indexed as

ProteomicsCell LineChromatography, LiquidHEK293 CellsHistone-Lysine N-MethyltransferaseHistonesHumansLysineNucleosomesPeptidesProteomeRecombinant ProteinsRibonucleoprotein, U1 Small NuclearRNA, MessengerSubstrate SpecificityTandem Mass SpectrometryHistone-Lysine N-MethyltransferaseHistonesLysineNucleosomesPeptidesProteomeRecombinant ProteinsRibonucleoprotein, U1 Small NuclearRNA, MessengerSETMAR protein, humanSNRNP70 protein, humanHistone MethylationMass Spectrometry (MS)Protein MethylationProteomicsSubstrate Specificity

Identifiers

PMID25795785
PMCPMC4424340
OpenAlexW220595325

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.