Evidence map›Paper›PMID 25794615›Full record

ArticleMolecular cell2015

The p53 C terminus controls site-specific DNA binding and promotes structural changes within the central DNA binding domain.

Oleg Laptenko, Idit Shiff, Will Freed-Pastor, Andrew Zupnick, Melissa Mattia, Ella Freulich, Inbal Shamir, Noam Kadouri, Tamar Kahan, James Manfredi and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 85 papers.

0numbers the graph read from it
0cells of the map it votes in
85citing papers in PubMed
4.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

85 citing papers in PubMed, 117 citations in OpenAlex.

  1. Article
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  4. Review
  5. Article
  6. Mutant p53 binds RNA to drive mitochondrial dysfunction.bioRxiv : the preprint server for biology · 2025
    Article
  7. Citrullination negatively regulates the functions of the p53 protein and opposes its ubiquitination and degradation.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  8. Article
  9. Review
  10. Article
  11. p53motifDB: integration of genomic information and tumour suppressor p53 binding motifs.Database : the journal of biological databases and curation · 2025
    Article
  12. Review
  13. Review
  14. Article
  15. Article
  16. Article
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  18. Review
  19. Review
  20. Article

25 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

Oleg LaptenkoDepartment of Biological Sciences, Columbia University, New York, NY 10027, USA.
Idit ShiffDepartment of Microbiology and Molecular Genetics, Hebrew University Medical School, IMRIC, Jerusalem 91120, Israel.
Will Freed-PastorDepartment of Biological Sciences, Columbia University, New York, NY 10027, USA.
Andrew ZupnickDepartment of Biological Sciences, Columbia University, New York, NY 10027, USA.
Melissa MattiaDepartment of Biological Sciences, Columbia University, New York, NY 10027, USA.
Ella FreulichDepartment of Biological Sciences, Columbia University, New York, NY 10027, USA.
Inbal ShamirDepartment of Microbiology and Molecular Genetics, Hebrew University Medical School, IMRIC, Jerusalem 91120, Israel.
Noam KadouriDepartment of Microbiology and Molecular Genetics, Hebrew University Medical School, IMRIC, Jerusalem 91120, Israel.
Tamar KahanDepartment of Microbiology and Molecular Genetics, Hebrew University Medical School, IMRIC, Jerusalem 91120, Israel.
James ManfrediDepartment of Oncological Sciences, Mount Sinai School of Medicine, New York, NY 10029, USA.
Itamar SimonDepartment of Microbiology and Molecular Genetics, Hebrew University Medical School, IMRIC, Jerusalem 91120, Israel. Electronic address: itamarsi@ekmd.huji.ac.il.
Carol PrivesDepartment of Biological Sciences, Columbia University, New York, NY 10027, USA. Electronic address: clp3@columbia.edu.
Columbia University · USHebrew University of Jerusalem · ILIcahn School of Medicine at Mount Sinai · US

Funding

Scientific ReagentsP01CA087497 · NCI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI PRIVES, CAROL · 2000 to 2021
$35.4M
Regulation of the p53 tumor suppressor proteinR01CA058316 · NCI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI PRIVES, CAROL · 1993 to 2017
$5.3M
PROPERTIES AND REGULATION OF P53 IN TUMOR CELLSR01CA077742 · NCI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI PRIVES, CAROL · 1999 to 2014
$3.8M
Role of the p53 C-terminal domain in tissue homeostasis, tumor suppression, and oncogenesisR01CA196234 · NCI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI MANFREDI, JAMES J, PRIVES, CAROL · 2016 to 2020
$3.0M
NCI NIH HHS CA77742NCI NIH HHS P01 CA087497NCI NIH HHS R01 CA058316NCI NIH HHS R01 CA077742NCI NIH HHS R01 CA196234
6 · The paper itself

Abstract

DNA binding by numerous transcription factors including the p53 tumor suppressor protein constitutes a vital early step in transcriptional activation. While the role of the central core DNA binding domain (DBD) of p53 in site-specific DNA binding has been established, the contribution of the sequence-independent C-terminal domain (CTD) is still not well understood. We investigated the DNA-binding properties of a series of p53 CTD variants using a combination of in vitro biochemical analyses and in vivo binding experiments. Our results provide several unanticipated and interconnected findings. First, the CTD enables DNA binding in a sequence-dependent manner that is drastically altered by either its modification or deletion. Second, dependence on the CTD correlates with the extent to which the p53 binding site deviates from the canonical consensus sequence. Third, the CTD enables stable formation of p53-DNA complexes to divergent binding sites via DNA-induced conformational changes within the DBD itself.

Indexed as

Binding SitesDNAHumansLigandsProtein Structure, TertiaryResponse ElementsSequence DeletionTumor Suppressor Protein p53DNALigandsTP53 protein, humanTumor Suppressor Protein p53

Identifiers

PMID25794615
PMCPMC6221458
OpenAlexW2018614905

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.