Evidence map›Paper›PMID 25794041›Full record

ArticlePloS one2015

High throughput measurement of γH2AX DSB repair kinetics in a healthy human population.

Preety M Sharma, Brian Ponnaiya, Maria Taveras, Igor Shuryak, Helen Turner, David J Brenner

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 50 papers.

0numbers the graph read from it
0cells of the map it votes in
50citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

50 citing papers in PubMed, 81 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Preety M SharmaCenter for Radiological Research, Columbia University, New York, New York, United States of America.
Brian PonnaiyaCenter for Radiological Research, Columbia University, New York, New York, United States of America.
Maria TaverasCenter for Radiological Research, Columbia University, New York, New York, United States of America.
Igor ShuryakCenter for Radiological Research, Columbia University, New York, New York, United States of America.
Helen TurnerCenter for Radiological Research, Columbia University, New York, New York, United States of America.
David J BrennerCenter for Radiological Research, Columbia University, New York, New York, United States of America.
Columbia University · US

Funding

Sample Engineering CoreU19AI067773 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI FORNACE, ALBERT J · 2005 to 2024
$105.4M
High Throughput Technology for Assessing Global DSB Repair CapacityR21ES019494 · NIEHS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI BRENNER, DAVID JONATHAN · 2011 to 2012
$443k
NIAID NIH HHS 5U19AI067773-09NIAID NIH HHS U19 AI067773NIEHS NIH HHS R21 5R21ES019494-02NIEHS NIH HHS R21 ES019494
6 · The paper itself

Abstract

The Columbia University RABiT (Rapid Automated Biodosimetry Tool) quantifies DNA damage using fingerstick volumes of blood. One RABiT protocol quantifies the total γ-H2AX fluorescence per nucleus, a measure of DNA double strand breaks (DSB) by an immunofluorescent assay at a single time point. Using the recently extended RABiT system, that assays the γ-H2AX repair kinetics at multiple time points, the present small scale study followed its kinetics post irradiation at 0.5 h, 2 h, 4 h, 7 h and 24 h in lymphocytes from 94 healthy adults. The lymphocytes were irradiated ex vivo with 4 Gy γ rays using an external Cs-137 source. The effect of age, gender, race, ethnicity, alcohol use on the endogenous and post irradiation total γ-H2AX protein yields at various time points were statistically analyzed. The endogenous γ-H2AX levels were influenced by age, race and alcohol use within Hispanics. In response to radiation, induction of γ-H2AX yields at 0.5 h and peak formation at 2 h were independent of age, gender, ethnicity except for race and alcohol use that delayed the peak to 4 h time point. Despite the shift in the peak observed, the γ-H2AX yields reached close to baseline at 24 h for all groups. Age and race affected the rate of progression of the DSB repair soon after the yields reached maximum. Finally we show a positive correlation between endogenous γ-H2AX levels with radiation induced γ-H2AX yields (RIY) (r=0.257, P=0.02) and a negative correlation with residuals (r=-0.521, P=<0.0001). A positive correlation was also observed between RIY and DNA repair rate (r=0.634, P<0.0001). Our findings suggest age, race, ethnicity and alcohol use influence DSB γ-H2AX repair kinetics as measured by RABiT immunofluorescent assay.

Indexed as

DNA Breaks, Double-StrandedDNA RepairHealthAdultAge FactorsAlcohol DrinkingEthnicityFemaleHigh-Throughput Screening AssaysHistonesHumansKineticsMaleMiddle AgedRacial GroupsSex CharacteristicsH2AX protein, humanHistones

Identifiers

PMID25794041
PMCPMC4368624
OpenAlexW2051187803

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.