Evidence map›Paper›PMID 25793639›Full record

ArticlePloS one2015

The effects of mycoplasma contamination upon the ability to form bioengineered 3D kidney cysts.

Teresa M DesRochers, Ivana Y Kuo, Erica P Kimmerling, Barbara E Ehrlich, David L Kaplan

Abstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Teresa M DesRochersDepartment of Biomedical Engineering, Tufts University, Medford, Massachusetts, United States of America.
Ivana Y KuoDepartments of Pharmacology and of Cellular and Molecular Physiology, School of Medicine, Yale University, New Haven, Connecticut, United States of America.
Erica P KimmerlingDepartment of Biomedical Engineering, Tufts University, Medford, Massachusetts, United States of America.
Barbara E EhrlichDepartments of Pharmacology and of Cellular and Molecular Physiology, School of Medicine, Yale University, New Haven, Connecticut, United States of America.
David L KaplanDepartment of Biomedical Engineering, Tufts University, Medford, Massachusetts, United States of America.

Funding

Yale Liver CenterP30DK034989 · NIDDK · YALE UNIVERSITY · PI YASUKO IWAKIRI · 1986 to 2026
$31.1M
Translational CoreP01DK057751 · NIDDK · YALE UNIVERSITY · PI NATHANSON, MICHAEL H · 2001 to 2020
$25.6M
Translational Bioreactors - Engineering Complex TissuesP41EB002520 · NIBIB · TUFTS UNIVERSITY MEDFORD · PI KAPLAN, DAVID L. · 2004 to 2018
$16.7M
Center for Polycystic Kidney Disease Research at YaleP30DK090744 · NIDDK · YALE UNIVERSITY · PI CAPLAN, MICHAEL J. · 2010 to 2014
$5.6M
Regulation of cholangiocytes by InsP3 receptor isoformsR01DK061747 · NIDDK · YALE UNIVERSITY · PI EHRLICH, BARBARA E., NATHANSON, MICHAEL H · 2003 to 2012
$3.4M
Regulation of polycystin-2 channel activityR01DK087844 · NIDDK · YALE UNIVERSITY · PI BOGGON, TITUS JONATHON, EHRLICH, BARBARA E. · 2010 to 2013
$1.6M
NIBIB NIH HHS P41 EB002520NIDDK NIH HHS P01 DK057751NIDDK NIH HHS P01 DK57751NIDDK NIH HHS P30 DK034989NIDDK NIH HHS P30 DK090744NIDDK NIH HHS P30 DK34989NIDDK NIH HHS R01 DK061747NIDDK NIH HHS R01 DK087844NIDDK NIH HHS R01 DK61747
6 · The paper itself

Abstract

Mycoplasma contamination of cell cultures is a pervasive, often undiagnosed and ignored problem in many laboratories that can result in reduced cell proliferation and changes in gene expression. Unless contamination is specifically suspected, it is often undetected in two dimensional (2D) cultures and the resulting effects of mycoplasma contamination are rarely appreciated and can lead to incorrect conclusions. Three dimensional (3D) tissue cultures are increasingly utilized to explore tissue development and phenotype. However, 3D cultures are more complex than 2D cell cultures and require a more controlled cellular environment in order to generate structures necessary to mimic in vivo responses and are often maintained for longer time periods. Changes to the microenvironment are assumed to have a more extreme effect upon the success of 3D tissue cultures than 2D cell cultures, but the effects of mycoplasma have not been studied. To test this hypothesis, we grew 2D cell cultures and 3D tissues from pig kidney epithelial cells (LLC-PK1) that were contaminated with mycoplasma and the same stock of cells after mycoplasma removal. We did not observe an effect of mycoplasma contamination on proliferation in 2D monolayer cell culture. However, cyst formation in 3D tissues was altered, with effects upon the number, size and structure of cysts formed. These data serve to reinforce the necessity of testing cell stocks for mycoplasma contamination.

Indexed as

Drug ContaminationAnimalsCell Culture TechniquesCell LineCell ProliferationCellular MicroenvironmentCulture MediaEpithelial CellsKidneyMycoplasmaSwineTissue EngineeringCulture Media

Identifiers

PMID25793639
PMCPMC4368695

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.