Evidence map›Paper›PMID 25793471›Full record

ArticlePloS one2015

Quantitative proteomic analysis of the rice (Oryza sativa L.) salt response.

Jianwen Xu, Hongxia Lan, Huimin Fang, Xi Huang, Hongsheng Zhang, Ji Huang

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 61 citations in OpenAlex.

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  20. Proteomic and physiological responses in mangroveTurkish journal of biology = Turk biyoloji dergisi · 2019
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Jianwen XuState key laboratory of crop genetics and germplasm enhancement, Nanjing Agricultural University, Nanjing, 210095, China; Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing, 210095, China.
Hongxia LanState key laboratory of crop genetics and germplasm enhancement, Nanjing Agricultural University, Nanjing, 210095, China; College of Life Sciences, Nanjing Agricultural University, Nanjing, 210095, China.
Huimin FangState key laboratory of crop genetics and germplasm enhancement, Nanjing Agricultural University, Nanjing, 210095, China; Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing, 210095, China.
Xi HuangState key laboratory of crop genetics and germplasm enhancement, Nanjing Agricultural University, Nanjing, 210095, China; Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing, 210095, China.
Hongsheng ZhangState key laboratory of crop genetics and germplasm enhancement, Nanjing Agricultural University, Nanjing, 210095, China; Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing, 210095, China.
Ji HuangState key laboratory of crop genetics and germplasm enhancement, Nanjing Agricultural University, Nanjing, 210095, China; Jiangsu Collaborative Innovation Center for Modern Crop Production, Nanjing, 210095, China.
Nanjing Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Salt stress is one of most serious limiting factors for crop growth and production. An isobaric Tags for Relative and Absolute Quantitation (iTRAQ) approach was used to analyze proteomic changes in rice shoots under salt stress in this study. A total of 56 proteins were significantly altered and 16 of them were enriched in the pathways of photosynthesis, antioxidant and oxidative phosphorylation. Among these 16 proteins, peroxiredoxin Q and photosystem I subunit D were up-regulated, while thioredoxin M-like, thioredoxin x, thioredoxin peroxidase, glutathione S-transferase F3, PSI subunit H, light-harvesting antenna complex I subunits, chloroplast chaperonin, vacuolar ATP synthase subunit H, and ATP synthase delta chain were down-regulated. Moreover, physiological data including total antioxidant capacity, peroxiredoxin activity, chlorophyll a/b content, glutathione S-transferase activity, reduced glutathione content and ATPase activity were consistent with changes in the levels of these proteins. The levels of the mRNAs encoding these proteins were also analyzed by real-time quantitative reverse transcription PCR, and approximately 86% of the results were consistent with the iTRAQ data. Importantly, our data suggest the important role of PSI in balancing energy supply and ROS generation under salt stress. This study provides information for an improved understanding of the function of photosynthesis and PSI in the salt-stress response of rice.

Indexed as

ProteomeProteomicsSalt ToleranceChlorophyllComputational BiologyGene Expression Regulation, PlantMolecular Sequence AnnotationOryzaOxidative PhosphorylationOxidative StressPlant ProteinsStress, PhysiologicalChlorophyllchlorophyll a'chlorophyll bPlant ProteinsProteome

Identifiers

PMID25793471
PMCPMC4368772
OpenAlexW2036499478

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.