Evidence map›Paper›PMID 25793375›Full record

ArticlePLoS genetics2015

Neurospora importin α is required for normal heterochromatic formation and DNA methylation.

Andrew D Klocko, Michael R Rountree, Paula L Grisafi, Shan M Hays, Keyur K Adhvaryu, Eric U Selker

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
  2. Article
  3. Rhythmic Nuclear Import Mediated by Importins Regulates thebioRxiv : the preprint server for biology · 2026
    Article
  4. Histone deacetylation and cytosine methylation compartmentalize heterochromatic regions in the genome organization ofProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Importin α: functions as a nuclear transport factor and beyond.Proceedings of the Japan Academy. Series B, Physical and biological sciences · 2018
    Review
  14. Induction of H3K9me3 and DNA methylation by tethered heterochromatin factors inProceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  15. Review
  16. Normal chromosome conformation depends on subtelomeric facultative heterochromatin in Neurospora crassa.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  17. Dual chromatin recognition by the histone deacetylase complex HCHC is required for proper DNA methylation in Neurospora crassa.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Andrew D KlockoInstitute of Molecular Biology, University of Oregon, Eugene, Oregon, United States of America.
Michael R RountreeInstitute of Molecular Biology, University of Oregon, Eugene, Oregon, United States of America.
Paula L GrisafiInstitute of Molecular Biology, University of Oregon, Eugene, Oregon, United States of America.
Shan M HaysInstitute of Molecular Biology, University of Oregon, Eugene, Oregon, United States of America.
Keyur K AdhvaryuInstitute of Molecular Biology, University of Oregon, Eugene, Oregon, United States of America.
Eric U SelkerInstitute of Molecular Biology, University of Oregon, Eugene, Oregon, United States of America.
University of Oregon · US

Funding

Genetic Aspects of DNA MethylationR37GM035690 · NIGMS · UNIVERSITY OF OREGON · PI SELKER, ERIC U. · 2003 to 2012
$5.2M
GENETIC ASPECTS OF DNA METHYLATIONR01GM035690 · NIGMS · UNIVERSITY OF OREGON · PI SELKER, ERIC U. · 1986 to 2016
$3.3M
Genetic analysis of DNA methylation in Neurospora crassaF32GM097821 · NIGMS · UNIVERSITY OF OREGON · PI KLOCKO, ANDREW DAVID · 2012 to 2013
$106k
NIGMS NIH HHS F32 GM097821NIGMS NIH HHS GM035690NIGMS NIH HHS GM097821NIGMS NIH HHS R01 GM035690NIGMS NIH HHS R37 GM035690
6 · The paper itself

Abstract

Heterochromatin and associated gene silencing processes play roles in development, genome defense, and chromosome function. In many species, constitutive heterochromatin is decorated with histone H3 tri-methylated at lysine 9 (H3K9me3) and cytosine methylation. In Neurospora crassa, a five-protein complex, DCDC, catalyzes H3K9 methylation, which then directs DNA methylation. Here, we identify and characterize a gene important for DCDC function, dim-3 (defective in methylation-3), which encodes the nuclear import chaperone NUP-6 (Importin α). The critical mutation in dim-3 results in a substitution in an ARM repeat of NUP-6 and causes a substantial loss of H3K9me3 and DNA methylation. Surprisingly, nuclear transport of all known proteins involved in histone and DNA methylation, as well as a canonical transport substrate, appear normal in dim-3 strains. Interactions between DCDC members also appear normal, but the nup-6(dim-3) allele causes the DCDC members DIM-5 and DIM-7 to mislocalize from heterochromatin and NUP-6dim-3 itself is mislocalized from the nuclear envelope, at least in conidia. GCN-5, a member of the SAGA histone acetyltransferase complex, also shows altered localization in dim-3, raising the possibility that NUP-6 is necessary to localize multiple chromatin complexes following nucleocytoplasmic transport.

Indexed as

alpha KaryopherinsCytosineDNA MethylationFungal ProteinsGene SilencingHeterochromatinHistone-Lysine N-MethyltransferaseHistonesLysineMutationNeurospora crassaalpha KaryopherinsCytosineFungal ProteinsHeterochromatinHistone-Lysine N-MethyltransferaseHistonesLysine

Identifiers

PMID25793375
PMCPMC4368784
OpenAlexW2076504095

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.