Evidence map›Paper›PMID 25793373›Full record

ArticlePloS one2015

The 12p13.33/RAD52 locus and genetic susceptibility to squamous cell cancers of upper aerodigestive tract.

Manon Delahaye-Sourdeix, Javier Oliver, Maria N Timofeeva, Valérie Gaborieau, Mattias Johansson, Amélie Chabrier, Magdalena B Wozniak, Darren R Brenner, Maxime P Vallée, Devasena Anantharaman and 42 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 12 citations in OpenAlex.

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  7. 53BP1 fosters fidelity of homology-directed DNA repair.Nature structural & molecular biology · 2016
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

52 authors at 20 institutions in 17 countries.

Manon Delahaye-SourdeixGenetic Cancer Susceptibility group (GCS), International Agency for Research on Cancer (IARC), Lyon, France.
Javier OliverGenetic Cancer Susceptibility group (GCS), International Agency for Research on Cancer (IARC), Lyon, France.
Maria N TimofeevaGenetic Epidemiology group (GEP), International Agency for Research on Cancer (IARC), Lyon, France; Colon Cancer Genetics Group, Institute of Genetics and Molecular Medicine, University of Edinburgh and Medical Research Council (MRC) Human Genetics Unit, Edinburgh, United Kingdom.
Valérie GaborieauGenetic Epidemiology group (GEP), International Agency for Research on Cancer (IARC), Lyon, France.
Mattias JohanssonGenetic Epidemiology group (GEP), International Agency for Research on Cancer (IARC), Lyon, France.
Amélie ChabrierGenetic Cancer Susceptibility group (GCS), International Agency for Research on Cancer (IARC), Lyon, France.
Magdalena B WozniakGenetic Epidemiology group (GEP), International Agency for Research on Cancer (IARC), Lyon, France.
Darren R BrennerGenetic Epidemiology group (GEP), International Agency for Research on Cancer (IARC), Lyon, France.
Maxime P ValléeGenetic Cancer Susceptibility group (GCS), International Agency for Research on Cancer (IARC), Lyon, France.
Devasena AnantharamanGenetic Epidemiology group (GEP), International Agency for Research on Cancer (IARC), Lyon, France.
Pagona LagiouDepartment of Hygiene, Epidemiology and Medical Statistics, University of Athens School of Medicine, Athens, Greece.
Ivana HolcátováInstitute of Hygiene and Epidemiology, 1st Faculty of Medicine, Charles University, Prague, Czech Republic.
Lorenzo RichiardiUniversity of Turin, Department of Medical Sciences, Unit of Cancer Epidemiology, Turin, Italy.
Kristina KjaerheimCancer Registry of Norway, Oslo, Norway.
Antonio AgudoCatalan Institute of Oncology-ICO, IDIBELL. L'Hospitalet de Llobregat, Barcelona, Spain.
Xavier CastellsaguéCatalan Institute of Oncology-ICO, IDIBELL. L'Hospitalet de Llobregat, Barcelona, Spain; CIBER Epidemiología y Salud Pública (CIBERESP), Madrid, Spain.
Tatiana V MacfarlaneSchool of Medicine and Dentistry, University of Aberdeen, Aberdeen, United Kingdom.
Luigi BarzanGeneral Hospital of Pordenone, Pordenone, Italy.
Cristina CanovaDepartment of Environmental Medicine and Public Health, University of Padova, Padova, Italy; MRC-HPA Centre for Environment and Health, Respiratory Epidemiology and Public Health, National Heart and Lung Institute, Imperial College, London, United Kingdom.
Nalin S ThakkerUniversity of Manchester, School of Dentistry, Manchester, United Kingdom.
David I ConwayUniversity of Glasgow Dental School, Glasgow, Scotland, United Kingdom.
Ariana ZnaorCroatian National Cancer Registry, Croatian National Institute of Public Health, Zagreb, Croatia.
Claire M HealyTrinity College School of Dental Science, Dublin, Ireland.
Wolfgang AhrensLeibniz Institute for Prevention Research and Epidemiology-BIPS, Bremen, Germany; Faculty of Mathematics and Computer Science, University of Bremen, Bremen, Germany.
David ZaridzeInstitute of Carcinogenesis, Cancer Research Centre, Moscow, Russian Federation.
Neonilia Szeszenia-DabrowskaDepartment of Epidemiology, Institute of Occupational Medicine, Lodz, Poland.
Jolanta LissowskaDepartment of Cancer Epidemiology and Prevention, M. Sklodowska-Curie Memorial Cancer Center and Institute of Oncology, Warsaw, Poland.
Eleonora FabianovaRegional Authority of Public Health, Banska Bystrica, Slovakia.
Ioan Nicolae MatesSaint Mary General and Esophageal Surgery Clinic, Carol Davila University of Medicine and Pharmacy, Bucharest, Romania.
Vladimir BenckoInstitute of Hygiene and Epidemiology, 1st Faculty of Medicine, Charles University, Prague, Czech Republic.
Lenka ForetovaDepartment of Cancer Epidemiology and Genetics, Masaryk Memorial Cancer Institute and Masaryk University, Brno, Czech Republic.
Vladimir JanoutPalacky University, Olomouc, Czech Republic.
Maria Paula CuradoInternational Prevention Research Institute (IPRI), Ecully, France.
Sergio KoifmanNational School of Public Health/FIOCRUZ, Rio de Janeiro, Brazil.
Ana MenezesUniversidade Federal de Pelotas, Pelotas, Brazil.
Victor Wünsch-FilhoUniversidade de Sao Paulo, Sao Paulo, Brazil.
José Eluf-NetoUniversidade de Sao Paulo, Sao Paulo, Brazil.
Paolo BoffettaThe Tisch Cancer Institute Mount Sinai School of Medicine, New York, NY, United States of America.
Leticia Fernández GarroteInstitute of Oncology and Radiobiology, Havana, Cuba.
Diego SerrainoCentro di Riferimento Oncologico, IRCSS, Unit of Epidemiology and Biostatistics, Aviano, Italy.
Marcin LenerDepartment of Genetics and Pathology, International Hereditary Cancer Center, Pomeranian Medical University, Szczecin, Poland.
Ewa JaworowskaDepartment of Otolaryngology and Laryngological Oncology, Pomeranian Medical University, Szczecin, Poland.
Jan LubińskiDepartment of Genetics and Pathology, International Hereditary Cancer Center, Pomeranian Medical University, Szczecin, Poland.
Stefania BocciaInstitute of Public Health, Section of Hygiene, Faculty of Medicine, Università Cattolica del Sacro Cuore, Rome, Italy.
Thangarajan RajkumarDept. of Molecular Oncology, Cancer Institute (WIA), Chennai, Tamil Nadu, India.
Tanuja A SamantCancer Research Institute, Advanced Centre for Treatment, Research and Education in Cancer, Tata Memorial Centre, Navi Mumbai, India.
Manoj B MahimkarCancer Research Institute, Advanced Centre for Treatment, Research and Education in Cancer, Tata Memorial Centre, Navi Mumbai, India.
Keitaro MatsuoDepartment of Health Promotion, Division of Oral Pathology, Kyushu Dental University, Kitakyushu, Japan.
Silvia FranceschiInfections and Cancer Epidemiology group (ICE), International Agency for Research on Cancer (IARC), Lyon, France.
Graham ByrnesBiostatistics group (BST), International Agency for Research on Cancer (IARC), Lyon, France.
Paul BrennanGenetic Epidemiology group (GEP), International Agency for Research on Cancer (IARC), Lyon, France.
James D McKayGenetic Cancer Susceptibility group (GCS), International Agency for Research on Cancer (IARC), Lyon, France.
Centre International de Recherche sur le Cancer · FRCharles University · CZInstitut d'Investigació Biomédica de Bellvitge · ESPomeranian Medical University · PLUniversidade de São Paulo · BRAdvanced Centre for Treatment, Research and Education in Cancer · INCancer Institute (WIA) · INCancer Registry of Norway · NOCarol Davila University of Medicine and Pharmacy · ROCentro di Riferimento Oncologico · ITFundação Oswaldo Cruz · BRIcahn School of Medicine at Mount Sinai · USInstituto de Oncología y Radiobiología · CUInternational Hereditary Cancer Center · PLInternational Prevention Research Institute · FRKyushu Dental University · JPMasaryk Memorial Cancer Institute · CZNational and Kapodistrian University of Athens · GRNofer Institute of Occupational Medicine · PLPalacký University Olomouc · CZ

Funding

GENETICS OF TOBACCO AND ALCOHOL RELATED CANCERSR01CA092039 · NCI · INTERNATIONAL AGENCY FOR RES ON CANCER · PI BRENNAN, PAUL JOSEPH · 2003 to 2010
$3.6M
Investigation of genetic variation in the alcohol metabolism genes and other keyR03DE020116 · NIDCR · INTERNATIONAL AGENCY FOR RES ON CANCER · PI MCKAY, JAMES DOWLING · 2010 to 2011
$175k
NCI NIH HHS R01 CA092039NCI NIH HHS R01 CA092039 05/05S1NIDCR NIH HHS 1R03DE020116NIDCR NIH HHS R03 DE020116World Health Organization 001
6 · The paper itself

Abstract

Genetic variants located within the 12p13.33/RAD52 locus have been associated with lung squamous cell carcinoma (LUSC). Here, within 5,947 UADT cancers and 7,789 controls from 9 different studies, we found rs10849605, a common intronic variant in RAD52, to be also associated with upper aerodigestive tract (UADT) squamous cell carcinoma cases (OR = 1.09, 95% CI: 1.04-1.15, p = 6x10(-4)). We additionally identified rs10849605 as a RAD52 cis-eQTL inUADT(p = 1x10(-3)) and LUSC (p = 9x10(-4)) tumours, with the UADT/LUSC risk allele correlated with increased RAD52 expression levels. The 12p13.33 locus, encompassing rs10849605/RAD52, was identified as a significant somatic focal copy number amplification in UADT(n = 374, q-value = 0.075) and LUSC (n = 464, q-value = 0.007) tumors and correlated with higher RAD52 tumor expression levels (p = 6x10(-48) and p = 3x10(-29) in UADT and LUSC, respectively). In combination, these results implicate increased RAD52 expression in both genetic susceptibility and tumorigenesis of UADT and LUSC tumors.

Indexed as

Genetic LociGenetic Predisposition to DiseaseCarcinoma, Squamous CellCase-Control StudiesChromosomes, Human, Pair 12Computer SimulationDemographyFemaleGerm CellsHead and Neck NeoplasmsHumansLung NeoplasmsMaleMiddle AgedPhysical Chromosome MappingPolymorphism, Single NucleotideRad52 DNA Repair and Recombination ProteinRAD52 protein, human

Identifiers

PMID25793373
PMCPMC4368781
OpenAlexW2010386642

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.