Evidence map›Paper›PMID 25792742›Full record

ArticleThe Journal of biological chemistry2015

Recruitment of the 40S ribosome subunit to the 3'-untranslated region (UTR) of a viral mRNA, via the eIF4 complex, facilitates cap-independent translation.

Sohani Das Sharma, Jelena J Kraft, W Allen Miller, Dixie J Goss

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 37 citations in OpenAlex.

  1. Review
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  3. Article
  4. Article
  5. Article
  6. Review
  7. Journal of virology · 2021
    Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Noncanonical Translation Initiation in Eukaryotes.Cold Spring Harbor perspectives in biology · 2019
    Review
  14. The Dynamics ofInsects · 2019
    Article
  15. Article
  16. Article
  17. Article
  18. Article
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  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Sohani Das SharmaFrom the Department of Chemistry, Hunter College and the Graduate Center, City University of New York, New York, New York 10065 and.
Jelena J Kraftthe Departments of Plant Pathology and Microbiology and.
W Allen Millerthe Departments of Plant Pathology and Microbiology and Biochemistry, Biophysics, Molecular Biology, and Microbiology, Iowa State University, Ames, Iowa 50011.
Dixie J GossFrom the Department of Chemistry, Hunter College and the Graduate Center, City University of New York, New York, New York 10065 and dgoss@hunter.cuny.edu.
Hunter College · USIowa State University · USThe Graduate Center, CUNY · US

Funding

Basic and Translational Research Center for Reducing Health DisparitiesG12MD007599 · NIMHD · HUNTER COLLEGE · PI ANGULO, JESUS A · 2012 to 2017
$14.6M
Control of cap-independent translation by a viral 3' UTRR01GM067104 · NIGMS · IOWA STATE UNIVERSITY · PI MILLER, WYATT ALLEN · 2003 to 2016
$3.0M
NIGMS NIH HHS 2R01 GM067104NIGMS NIH HHS R01 GM067104NIMHD NIH HHS G12 MD007599
6 · The paper itself

Abstract

Barley yellow dwarf virus mRNA, which lacks both cap and poly(A) tail, has a translation element (3'-BTE) in its 3'-UTR essential for efficient translation initiation at the 5'-proximal AUG. This mechanism requires eukaryotic initiation factor 4G (eIF4G), subunit of heterodimer eIF4F (plant eIF4F lacks eIF4A), and 3'-BTE-5'-UTR interaction. Using fluorescence anisotropy, SHAPE (selective 2'-hydroxyl acylation analyzed by primer extension) analysis, and toeprinting, we found that (i) 40S subunits bind to BTE (Kd = 350 ± 30 nm), (ii) the helicase complex eIF4F-eIF4A-eIF4B-ATP increases 40S subunit binding (Kd = 120 ± 10 nm) to the conserved stem-loop I of the 3'-BTE by exposing more unpaired bases, and (iii) long distance base pairing transfers this complex to the 5'-end of the mRNA, where translation initiates. Although 3'-5' interactions have been recognized as important in mRNA translation, barley yellow dwarf virus employs a novel mechanism utilizing the 3'-UTR as the primary site of ribosome recruitment.

Indexed as

Protein Biosynthesis3' Untranslated RegionsAdenosine TriphosphateBase SequenceEukaryotic Initiation Factor-4FLuteovirusProtein IsoformsRibosome Subunits, Small, EukaryoticRNA CapsRNA HelicasesRNA, Viral3' Untranslated RegionsAdenosine TriphosphateEukaryotic Initiation Factor-4FProtein IsoformsRNA CapsRNA HelicasesRNA, ViralPlant VirusProtein-Nucleic Acid InteractionProtein SynthesisRNA StructureRNA Virus

Identifiers

PMID25792742
PMCPMC4416834
OpenAlexW2145759986

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.