Evidence map›Paper›PMID 25792597›Full record

ArticleGenes & development2015

Regulation of Mec1 kinase activity by the SWI/SNF chromatin remodeling complex.

Prabodh Kapoor, Yunhe Bao, Jing Xiao, Jie Luo, Jianfeng Shen, Jim Persinger, Guang Peng, Jeff Ranish, Blaine Bartholomew, Xuetong Shen

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
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  7. Genome maintenance functions of the INO80 chromatin remodeller.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2017
    Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Prabodh KapoorDepartment of Epigenetics and Molecular Carcinogenesis, The University of Texas M.D. Anderson Cancer Center, Smithville, Texas 78957, USA;
Yunhe BaoDepartment of Epigenetics and Molecular Carcinogenesis, The University of Texas M.D. Anderson Cancer Center, Smithville, Texas 78957, USA;
Jing XiaoDepartment of Epigenetics and Molecular Carcinogenesis, The University of Texas M.D. Anderson Cancer Center, Smithville, Texas 78957, USA;
Jie LuoInstitute for Systems Biology, Seattle, Washington 98109, USA;
Jianfeng ShenDepartment of Clinical Cancer Prevention, The University of Texas M.D. Anderson Cancer Center, Houston, Texas 77030, USA.
Jim PersingerDepartment of Epigenetics and Molecular Carcinogenesis, The University of Texas M.D. Anderson Cancer Center, Smithville, Texas 78957, USA;
Guang PengDepartment of Clinical Cancer Prevention, The University of Texas M.D. Anderson Cancer Center, Houston, Texas 77030, USA.
Jeff RanishInstitute for Systems Biology, Seattle, Washington 98109, USA;
Blaine BartholomewDepartment of Epigenetics and Molecular Carcinogenesis, The University of Texas M.D. Anderson Cancer Center, Smithville, Texas 78957, USA;
Xuetong ShenDepartment of Epigenetics and Molecular Carcinogenesis, The University of Texas M.D. Anderson Cancer Center, Smithville, Texas 78957, USA; snowshen@mac.com.
The University of Texas MD Anderson Cancer Center · USInstitute for Systems Biology · US

Funding

Quantitative Systems BiologyP50GM076547 · NIGMS · INSTITUTE FOR SYSTEMS BIOLOGY · PI HOOD, LEROY E · 2006 to 2016
$30.6M
TRANSCRIPTIONAL ACTIVATION BY REORGANIZING CHROMATINR01GM048413 · NIGMS · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI BARTHOLOMEW, BLAINE · 1998 to 2015
$4.7M
Post-translational Modification of ActinR01GM093104 · NIGMS · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI SHEN, XUETONG · 2010 to 2019
$2.8M
Function of Nuclear Actin and Actin Related ProteinsK22CA100017 · NCI · UNIVERSITY OF TEXAS MD ANDERSON CAN CTR · PI SHEN, XUETONG · 2003 to 2005
$473k
Mapping the Dynamic Architecture of the Human Mediator ComplexR21CA175849 · NCI · INSTITUTE FOR SYSTEMS BIOLOGY · PI RANISH, JEFFREY A, TAATJES, DYLAN J · 2013 to 2014
$385k
NCI NIH HHS K22 CA100017NCI NIH HHS K22CA100017NCI NIH HHS R21 CA175849NCI NIH HHS R21CA175849NIGMS NIH HHS 2P50 GM076547NIGMS NIH HHS P50 GM076547NIGMS NIH HHS R01 GM048413NIGMS NIH HHS R01 GM093104NIGMS NIH HHS R01GM093104NIGMS NIH HHS R01GM48413
6 · The paper itself

Abstract

ATP-dependent chromatin remodeling complexes alter chromatin structure through interactions with chromatin substrates such as DNA, histones, and nucleosomes. However, whether chromatin remodeling complexes have the ability to regulate nonchromatin substrates remains unclear. Saccharomyces cerevisiae checkpoint kinase Mec1 (ATR in mammals) is an essential master regulator of genomic integrity. Here we found that the SWI/SNF chromatin remodeling complex is capable of regulating Mec1 kinase activity. In vivo, Mec1 activity is reduced by the deletion of Snf2, the core ATPase subunit of the SWI/SNF complex. SWI/SNF interacts with Mec1, and cross-linking studies revealed that the Snf2 ATPase is the main interaction partner for Mec1. In vitro, SWI/SNF can activate Mec1 kinase activity in the absence of chromatin or known activators such as Dpb11. The subunit requirement of SWI/SNF-mediated Mec1 regulation differs from that of SWI/SNF-mediated chromatin remodeling. Functionally, SWI/SNF-mediated Mec1 regulation specifically occurs in S phase of the cell cycle. Together, these findings identify a novel regulator of Mec1 kinase activity and suggest that ATP-dependent chromatin remodeling complexes can regulate nonchromatin substrates such as a checkpoint kinase.

Indexed as

Adenosine TriphosphatasesChromatinChromatin Assembly and DisassemblyChromosomal Proteins, Non-HistoneDNA DamageEnzyme ActivationEnzyme ActivatorsIntracellular Signaling Peptides and ProteinsProtein Serine-Threonine KinasesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsS PhaseTranscription FactorsAdenosine TriphosphatasesChromatinChromosomal Proteins, Non-HistoneEnzyme ActivatorsIntracellular Signaling Peptides and ProteinsMEC1 protein, S cerevisiaeProtein Serine-Threonine KinasesSaccharomyces cerevisiae ProteinsSNF2 protein, S cerevisiaeSWI-SNF-B chromatin-remodeling complexTranscription FactorsATRcheckpoint regulationchromatin remodelingMec1SWI/SNF

Identifiers

PMID25792597
PMCPMC4378192
OpenAlexW2135526700

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.