Evidence map›Paper›PMID 25790435›Full record

ArticlePloS one2015

The GerW protein is not involved in the germination of spores of Bacillus species.

Jose Cruz-Mora, Abigail Pérez-Valdespino, Srishti Gupta, Nilumi Withange, Ritsuko Kuwana, Hiromu Takamatsu, Graham Christie, Peter Setlow

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.7field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 5 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

Jose Cruz-MoraDepartment of Molecular Biology and Biophysics, University of Connecticut Health Center, Farmington, Connecticut, United States of America.
Abigail Pérez-ValdespinoDepartment of Molecular Biology and Biophysics, University of Connecticut Health Center, Farmington, Connecticut, United States of America.
Srishti GuptaDepartment of Chemical Engineering and Biotechnology, University of Cambridge, Cambridge, United Kingdom.
Nilumi WithangeDepartment of Chemical Engineering and Biotechnology, University of Cambridge, Cambridge, United Kingdom.
Ritsuko KuwanaFaculty of Pharmaceutical Sciences, Setsunan University, Hirakata, Osaka, Japan.
Hiromu TakamatsuFaculty of Pharmaceutical Sciences, Setsunan University, Hirakata, Osaka, Japan.
Graham ChristieDepartment of Chemical Engineering and Biotechnology, University of Cambridge, Cambridge, United Kingdom.
Peter SetlowDepartment of Molecular Biology and Biophysics, University of Connecticut Health Center, Farmington, Connecticut, United States of America.
UConn Health · USUniversity of Cambridge · GBSetsunan University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Germination of dormant spores of Bacillus species is initiated when nutrient germinants bind to germinant receptors in spores' inner membrane and this interaction triggers the release of dipicolinic acid and cations from the spore core and their replacement by water. Bacillus subtilis spores contain three functional germinant receptors encoded by the gerA, gerB, and gerK operons. The GerA germinant receptor alone triggers germination with L-valine or L-alanine, and the GerB and GerK germinant receptors together trigger germination with a mixture of L-asparagine, D-glucose, D-fructose and KCl (AGFK). Recently, it was reported that the B. subtilis gerW gene is expressed only during sporulation in developing spores, and that GerW is essential for L-alanine germination of B. subtilis spores but not for germination with AGFK. However, we now find that loss of the B. subtilis gerW gene had no significant effects on: i) rates of spore germination with L-alanine; ii) spores' levels of germination proteins including GerA germinant receptor subunits; iii) AGFK germination; iv) spore germination by germinant receptor-independent pathways; and v) outgrowth of germinated spores. Studies in Bacillus megaterium did find that gerW was expressed in the developing spore during sporulation, and in a temperature-dependent manner. However, disruption of gerW again had no effect on the germination of B. megaterium spores, whether germination was triggered via germinant receptor-dependent or germinant receptor-independent pathways.

Indexed as

AlanineAsparagineBacillusBacillus subtilisBacterial Proteinsbeta-GalactosidaseGenotypeGlucoseSpores, BacterialTemperatureValineAlanineAsparagineBacterial Proteinsbeta-GalactosidaseGlucoseValine

Identifiers

PMID25790435
PMCPMC4366231
OpenAlexW1994440960

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.