Evidence map›Paper›PMID 25789972›Full record

ArticleCell death & disease2015

Homology and enzymatic requirements of microhomology-dependent alternative end joining.

S Sharma, S M Javadekar, M Pandey, M Srivastava, R Kumari, S C Raghavan

Open access · goldAbstract read
In one paragraph

Article in Cell death & disease, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 89 papers.

0numbers the graph read from it
0cells of the map it votes in
89citing papers in PubMed
7.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

89 citing papers in PubMed, 173 citations in OpenAlex.

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29 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

S SharmaDepartment of Biochemistry, Indian Institute of Science, Bangalore 560012, India.
S M JavadekarDepartment of Biochemistry, Indian Institute of Science, Bangalore 560012, India.
M PandeyDepartment of Biochemistry, Indian Institute of Science, Bangalore 560012, India.
M SrivastavaDepartment of Biochemistry, Indian Institute of Science, Bangalore 560012, India.
R KumariDepartment of Biochemistry, Indian Institute of Science, Bangalore 560012, India.
S C RaghavanDepartment of Biochemistry, Indian Institute of Science, Bangalore 560012, India.
Indian Institute of Science Bangalore · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nonhomologous DNA end joining (NHEJ) is one of the major double-strand break (DSB) repair pathways in higher eukaryotes. Recently, it has been shown that alternative NHEJ (A-NHEJ) occurs in the absence of classical NHEJ and is implicated in chromosomal translocations leading to cancer. In the present study, we have developed a novel biochemical assay system utilizing DSBs flanked by varying lengths of microhomology to study microhomology-mediated alternative end joining (MMEJ). We show that MMEJ can operate in normal cells, when microhomology is present, irrespective of occurrence of robust classical NHEJ. Length of the microhomology determines the efficiency of MMEJ, 5 nt being obligatory. Using this biochemical approach, we show that products obtained are due to MMEJ, which is dependent on MRE11, NBS1, LIGASE III, XRCC1, FEN1 and PARP1. Thus, we define the enzymatic machinery and microhomology requirements of alternative NHEJ using a well-defined biochemical system.

Indexed as

DNA Breaks, Double-StrandedAnimalsCell-Free SystemDNA-Binding ProteinsDNA End-Joining RepairDNA RepairDNA Repair EnzymesFlap EndonucleasesLigasesMRE11 Homologue ProteinPoly (ADP-Ribose) Polymerase-1Poly(ADP-ribose) PolymerasesRatsTranslocation, GeneticX-ray Repair Cross Complementing Protein 1DNA-Binding ProteinsDNA Repair EnzymesFen1 protein, ratFlap EndonucleasesLigasesMRE11 Homologue ProteinMre11 protein, ratParp1 protein, ratPoly (ADP-Ribose) Polymerase-1Poly(ADP-ribose) PolymerasesX-ray Repair Cross Complementing Protein 1Xrcc1 protein, rat

Identifiers

PMID25789972
PMCPMC4385936
OpenAlexW1979240756

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.