Evidence map›Paper›PMID 25789472›Full record

ArticlePloS one2015

Nuclear-cytoplasmic conflict in pea (Pisum sativum L.) is associated with nuclear and plastidic candidate genes encoding acetyl-CoA carboxylase subunits.

Vera S Bogdanova, Olga O Zaytseva, Anatoliy V Mglinets, Natalia V Shatskaya, Oleg E Kosterin, Gennadiy V Vasiliev

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 50 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Plastid Genomes of Flowering Plants: Essential Principles.Methods in molecular biology (Clifton, N.J.) · 2021
    Article
  10. Article
  11. Review
  12. Selfish Mitonuclear Conflict.Current biology : CB · 2019
    Review
  13. Allelic Diversity of Acetyl Coenzyme A CarboxylaseInternational journal of molecular sciences · 2019
    Article
  14. Chloroplast competition is controlled by lipid biosynthesis in evening primroses.Proceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  15. Article
  16. Domestication of Pea (Frontiers in plant science · 2018
    Article
  17. Article
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Vera S BogdanovaInstitute of Cytology and Genetics of Siberian Division of Russian Academy of Sciences, Novosibirsk, Russia.
Olga O ZaytsevaInstitute of Cytology and Genetics of Siberian Division of Russian Academy of Sciences, Novosibirsk, Russia; Novosibirsk State University, Novosibirsk, Russia.
Anatoliy V MglinetsInstitute of Cytology and Genetics of Siberian Division of Russian Academy of Sciences, Novosibirsk, Russia.
Natalia V ShatskayaInstitute of Cytology and Genetics of Siberian Division of Russian Academy of Sciences, Novosibirsk, Russia.
Oleg E KosterinInstitute of Cytology and Genetics of Siberian Division of Russian Academy of Sciences, Novosibirsk, Russia; Novosibirsk State University, Novosibirsk, Russia.
Gennadiy V VasilievInstitute of Cytology and Genetics of Siberian Division of Russian Academy of Sciences, Novosibirsk, Russia.
Institute of Cytology and Genetics · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In crosses of wild and cultivated peas (Pisum sativum L.), nuclear-cytoplasmic incompatibility frequently occurs manifested as decreased pollen fertility, male gametophyte lethality, sporophyte lethality. High-throughput sequencing of plastid genomes of one cultivated and four wild pea accessions differing in cross-compatibility was performed. Candidate genes for involvement in the nuclear-plastid conflict were searched in the reconstructed plastid genomes. In the annotated Medicago truncatula genome, nuclear candidate genes were searched in the portion syntenic to the pea chromosome region known to harbor a locus involved in the conflict. In the plastid genomes, a substantial variability of the accD locus represented by nucleotide substitutions and indels was found to correspond to the pattern of cross-compatibility among the accessions analyzed. Amino acid substitutions in the polypeptides encoded by the alleles of a nuclear locus, designated as Bccp3, with a complementary function to accD, fitted the compatibility pattern. The accD locus in the plastid genome encoding beta subunit of the carboxyltransferase of acetyl-coA carboxylase and the nuclear locus Bccp3 encoding biotin carboxyl carrier protein of the same multi-subunit enzyme were nominated as candidate genes for main contribution to nuclear-cytoplasmic incompatibility in peas. Existence of another nuclear locus involved in the accD-mediated conflict is hypothesized.

Indexed as

Acetyl-CoA CarboxylaseCell NucleolusCytoplasmGenome, PlantHigh-Throughput Nucleotide SequencingMolecular Sequence DataPisum sativumPlastidsAcetyl-CoA Carboxylase

Identifiers

PMID25789472
PMCPMC4366379
OpenAlexW2083830735

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.