Evidence map›Paper›PMID 25788982›Full record

ArticleBiotechnology for biofuels2015

The use of fluorescent Nile red and BODIPY for lipid measurement in microalgae.

Judith Rumin, Hubert Bonnefond, Bruno Saint-Jean, Catherine Rouxel, Antoine Sciandra, Olivier Bernard, Jean-Paul Cadoret, Gaël Bougaran

Open access · goldAbstract read
In one paragraph

Article in Biotechnology for biofuels, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 116 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
116citing papers in PubMed, 1 pooled it
8.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

116 citing papers in PubMed, 1 synthesis or guideline pooled it, 367 citations in OpenAlex.

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56 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Judith Rumin *IFREMER, PBA, 44311 Nantes, France.
Hubert Bonnefond *CNRS-UMPC, LOV UMR 7093, 06230 Villefranche-sur-mer, France.
Bruno Saint-JeanIFREMER, PBA, 44311 Nantes, France.
Catherine RouxelIFREMER, PBA, 44311 Nantes, France.
Antoine SciandraCNRS-UMPC, LOV UMR 7093, 06230 Villefranche-sur-mer, France.
Olivier BernardINRIA BIOCORE, 06902 Sophia Antipolis, Cedex France.
Jean-Paul CadoretIFREMER, PBA, 44311 Nantes, France.
Gaël BougaranIFREMER, PBA, 44311 Nantes, France.
Ifremer · FRLaboratoire d’Océanographie de Villefranche · FRLaboratoire Physiologie Biotechnologie des Algues · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Microalgae are currently emerging as one of the most promising alternative sources for the next generation of food, feed, cosmetics and renewable energy in the form of biofuel. Microalgae constitute a diverse group of microorganisms with advantages like fast and efficient growth. In addition, they do not compete for arable land and offer very high lipid yield potential. Major challenges for the development of this resource are to select lipid-rich strains using high-throughput staining for neutral lipid content in microalgae species. For this purpose, the fluorescent dyes most commonly used to quantify lipids are Nile red and BODIPY 505/515. Their fluorescent staining for lipids offers a rapid and inexpensive analysis tool to measure neutral lipid content, avoiding time-consuming and costly gravimetric analysis. This review collates and presents recent advances in algal lipid staining and focuses on Nile red and BODIPY 505/515 staining characteristics. The available literature addresses the limitations of fluorescent dyes under certain conditions, such as spectral properties, dye concentrations, cell concentrations, temperature and incubation duration. Moreover, the overall conclusion of the present review study gives limitations on the use of fluorochrome for screening of lipid-rich microalgae species and suggests improved protocols for staining recalcitrant microalgae and recommendations for the staining quantification.

Indexed as

BiodieselBODIPY 505/515FluorescenceMicroalgaeNeutral lipidNile red

Identifiers

PMID25788982
PMCPMC4364489
OpenAlexW2121854397

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.