Evidence map›Paper›PMID 25787256›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Ribosomal frameshifting and dual-target antiactivation restrict quorum-sensing-activated transfer of a mobile genetic element.

Joshua P Ramsay, Laura G L Tester, Anthony S Major, John T Sullivan, Christina D Edgar, Torsten Kleffmann, Jackson R Patterson-House, Drew A Hall, Warren P Tate, Michael F Hynes and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 47 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Why are rhizobial symbiosis genes mobile?Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2022
    Article
  8. Article
  9. Article
  10. Symbiosis islands of Loteae-nodulatingMicrobial genomics · 2020
    Article
  11. Review
  12. Review
  13. Rhizobia: from saprophytes to endosymbionts.Nature reviews. Microbiology · 2018
    Review
  14. Article
  15. Review
  16. Plant nodulation inducers enhance horizontal gene transfer of Azorhizobium caulinodans symbiosis island.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  17. Assembly and transfer of tripartite integrative and conjugative genetic elements.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 3 countries.

Joshua P RamsayDepartments of Microbiology and Immunology and Curtin Health Innovation Research Institute Biosciences Precinct, Faculty of Health Sciences, Curtin University, Bentley, WA 6102, Australia; and joshramsay@gmail.com.
Laura G L TesterDepartments of Microbiology and Immunology and.
Anthony S MajorDepartments of Microbiology and Immunology and.
John T SullivanDepartments of Microbiology and Immunology and.
Christina D EdgarBiochemistry, University of Otago, Dunedin 9016, New Zealand;
Torsten KleffmannBiochemistry, University of Otago, Dunedin 9016, New Zealand;
Jackson R Patterson-HouseCurtin Health Innovation Research Institute Biosciences Precinct, Faculty of Health Sciences, Curtin University, Bentley, WA 6102, Australia; and.
Drew A HallCurtin Health Innovation Research Institute Biosciences Precinct, Faculty of Health Sciences, Curtin University, Bentley, WA 6102, Australia; and.
Warren P TateBiochemistry, University of Otago, Dunedin 9016, New Zealand;
Michael F HynesDepartment of Biological Sciences, University of Calgary, Calgary, AB T2N 1N4, Canada.
Clive W RonsonDepartments of Microbiology and Immunology and.
Curtin University · AUUniversity of Otago · NZUniversity of Calgary · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Symbiosis islands are integrative and conjugative mobile genetic elements that convert nonsymbiotic rhizobia into nitrogen-fixing symbionts of leguminous plants. Excision of the Mesorhizobium loti symbiosis island ICEMlSym(R7A) is indirectly activated by quorum sensing through TraR-dependent activation of the excisionase gene rdfS. Here we show that a +1 programmed ribosomal frameshift (PRF) fuses the coding sequences of two TraR-activated genes, msi172 and msi171, producing an activator of rdfS expression named Frameshifted excision activator (FseA). Mass-spectrometry and mutational analyses indicated that the PRF occurred through +1 slippage of the tRNA(phe) from UUU to UUC within a conserved msi172-encoded motif. FseA activated rdfS expression in the absence of ICEMlSym(R7A), suggesting that it directly activated rdfS transcription, despite being unrelated to any characterized DNA-binding proteins. Bacterial two-hybrid and gene-reporter assays demonstrated that FseA was also bound and inhibited by the ICEMlSym(R7A)-encoded quorum-sensing antiactivator QseM. Thus, activation of ICEMlSym(R7A) excision is counteracted by TraR antiactivation, ribosomal frameshifting, and FseA antiactivation. This robust suppression likely dampens the inherent biological noise present in the quorum-sensing autoinduction circuit and ensures that ICEMlSym(R7A) transfer only occurs in a subpopulation of cells in which both qseM expression is repressed and FseA is translated. The architecture of the ICEMlSym(R7A) transfer regulatory system provides an example of how a set of modular components have assembled through evolution to form a robust genetic toggle that regulates gene transcription and translation at both single-cell and cell-population levels.

Indexed as

Frameshifting, RibosomalInterspersed Repetitive SequencesQuorum SensingBase Sequencebeta-GalactosidaseBinding SitesGene Transfer TechniquesGenomic IslandsMass SpectrometryMesorhizobiumPlantsPlasmidsPromoter Regions, GeneticProtein BiosynthesisRhizobiumRibosomesbeta-GalactosidaseTranscription Factorsantiactivatorhorizontal gene transferICEquorum sensingribosomal frameshift

Identifiers

PMID25787256
PMCPMC4386382
OpenAlexW2166831851

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.