Evidence map›Paper›PMID 25785713›Full record

ArticlePloS one2015

Translational arrest due to cytoplasmic redox stress delays adaptation to growth on methanol and heterologous protein expression in a typical fed-batch culture of Pichia pastoris.

Bryn Edwards-Jones, Rochelle Aw, Geraint R Barton, Gregory D Tredwell, Jacob G Bundy, David J Leak

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Bryn Edwards-JonesDepartment of Life Sciences, Faculty of Natural Sciences, Imperial College London, London, SW7 2AZ, United Kingdom.
Rochelle AwDepartment of Life Sciences, Faculty of Natural Sciences, Imperial College London, London, SW7 2AZ, United Kingdom.
Geraint R BartonDepartment of Life Sciences, Faculty of Natural Sciences, Imperial College London, London, SW7 2AZ, United Kingdom.
Gregory D TredwellDepartment of Surgery & Cancer, Faculty of Medicine, Imperial College London, London, SW7 2AZ, United Kingdom.
Jacob G BundyDepartment of Surgery & Cancer, Faculty of Medicine, Imperial College London, London, SW7 2AZ, United Kingdom.
David J LeakDepartment of Life Sciences, Faculty of Natural Sciences, Imperial College London, London, SW7 2AZ, United Kingdom; Department of Biology & Biochemistry, University of Bath, Claverton Down, Bath BA2 7AY, United Kingdom.
Imperial College London · GBUniversity of Bath · GB

Funding

Biotechnology and Biological Sciences Research Council BB/F004907/1Biotechnology and Biological Sciences Research Council BBF0049071
6 · The paper itself

Abstract

resultsWe have followed a typical fed-batch induction regime for heterologous protein production under the control of the AOX1 promoter using both microarray and metabolomic analysis. The genetic constructs involved 1 and 3 copies of the TRY1 gene, encoding human trypsinogen. In small-scale laboratory cultures, expression of the 3 copy-number construct induced the unfolded protein response (UPR) sufficiently that titres of extracellular trypsinogen were lower in the 3-copy construct than with the 1-copy construct. In the fed-batch-culture, a similar pattern was observed, with higher expression from the 1-copy construct, but in this case there was no significant induction of UPR with the 3-copy strain. Analysis of the microarray and metabolomic information indicates that the 3-copy strain was undergoing cytoplasmic redox stress at the point of induction with methanol. In this Crabtree-negative yeast, this redox stress appeared to delay the adaptation to growth on methanol and supressed heterologous protein production, probably due to a block in translation.

conclusionAlthough redox imbalance as a result of artificially imposed hypoxia has previously been described, this is the first time that it has been characterised as a result of a transient metabolic imbalance and shown to involve a stress response which can lead to translational arrest. Without detailed analysis of the underlying processes it could easily have been mis-interpreted as secretion stress, transmitted through the UPR.

Indexed as

Gene Expression Regulation, FungalProtein BiosynthesisAdaptation, PhysiologicalBatch Cell Culture TechniquesCulture MediaDNA Copy Number VariationsHumansMethanolOxidation-ReductionOxidative StressPichiaPlasmidsPromoter Regions, GeneticProtein EngineeringTransgenesTrypsinCulture MediaMethanolPRSS1 protein, humanTrypsin

Identifiers

PMID25785713
PMCPMC4364781
OpenAlexW2013625265

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.