Evidence map›Paper›PMID 25784353›Full record

ArticleScientific reports2015

Structure based aggregation studies reveal the presence of helix-rich intermediate during α-Synuclein aggregation.

Dhiman Ghosh, Pradeep K Singh, Shruti Sahay, Narendra Nath Jha, Reeba S Jacob, Shamik Sen, Ashutosh Kumar, Roland Riek, Samir K Maji

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 86 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
86citing papers in PubMed, 1 pooled it
11.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

86 citing papers in PubMed, 1 synthesis or guideline pooled it, 213 citations in OpenAlex.

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26 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Dhiman GhoshDepartment of Biosciences and Bioengineering, IIT Bombay, Powai, Mumbai, India 400076.
Pradeep K SinghDepartment of Biosciences and Bioengineering, IIT Bombay, Powai, Mumbai, India 400076.
Shruti SahayDepartment of Biosciences and Bioengineering, IIT Bombay, Powai, Mumbai, India 400076.
Narendra Nath JhaDepartment of Biosciences and Bioengineering, IIT Bombay, Powai, Mumbai, India 400076.
Reeba S JacobDepartment of Biosciences and Bioengineering, IIT Bombay, Powai, Mumbai, India 400076.
Shamik SenDepartment of Biosciences and Bioengineering, IIT Bombay, Powai, Mumbai, India 400076.
Ashutosh KumarDepartment of Biosciences and Bioengineering, IIT Bombay, Powai, Mumbai, India 400076.
Roland RiekLaboratory for Physical Chemistry, Wolfgang-Pauli-Str. 10, ETH Zurich, CH-8093 Zurich, Switzerland.
Samir K MajiDepartment of Biosciences and Bioengineering, IIT Bombay, Powai, Mumbai, India 400076.
Indian Institute of Technology Bombay · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mechanistic understanding of nucleation dependent polymerization by α-synuclein (α-Syn) into toxic oligomers and amyloids is important for the drug development against Parkinson's disease. However the structural and morphological characterization during nucleation and subsequent fibrillation process of α-Syn is not clearly understood. Using a variety of complementary biophysical techniques monitoring entire pathway of nine different synucleins, we found that transition of unstructured conformation into β-sheet rich fibril formation involves helix-rich intermediates. These intermediates are common for all aggregating synucleins, contain high solvent-exposed hydrophobic surfaces, are cytotoxic to SHSY-5Y cells and accelerate α-Syn aggregation efficiently. A multidimensional NMR study characterizing the intermediate accompanied with site-specific fluorescence study suggests that the N-terminal and central portions mainly participate in the helix-rich intermediate formation while the C-terminus remained in an extended conformation. However, significant conformational transitions occur at the middle and at the C-terminus during helix to β-sheet transition as evident from Trp fluorescence study. Since partial helix-rich intermediates were also observed for other amyloidogenic proteins such as Aβ and IAPP, we hypothesize that this class of intermediates may be one of the important intermediates for amyloid formation pathway by many natively unstructured protein/peptides and represent a potential target for drug development against amyloid diseases.

Indexed as

alpha-SynucleinAmyloidCell Line, TumorCell SurvivalCircular DichroismHumansHydrophobic and Hydrophilic InteractionsMicroscopy, Atomic ForceMicroscopy, ElectronNuclear Magnetic Resonance, BiomolecularProtein Structure, SecondaryProtein Structure, TertiaryRecombinant ProteinsSpectroscopy, Fourier Transform Infraredalpha-SynucleinAmyloidRecombinant Proteins

Identifiers

PMID25784353
PMCPMC4363886
OpenAlexW2032487213

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.