Evidence map›Paper›PMID 25782768›Full record

ArticleInternational journal of systematic and evolutionary microbiology2015

Phenotypic characterization of Sodalis praecaptivus sp. nov., a close non-insect-associated member of the Sodalis-allied lineage of insect endosymbionts.

Abhishek Chari, Kelly F Oakeson, Shinichiro Enomoto, D Grant Jackson, Mark A Fisher, Colin Dale

Open access · greenAbstract read
In one paragraph

Article in International journal of systematic and evolutionary microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
5.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 57 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Abhishek ChariDepartment of Biology, University of Utah, 257 South 1400 East, Salt Lake City, UT 84112, USA.
Kelly F OakesonDepartment of Biology, University of Utah, 257 South 1400 East, Salt Lake City, UT 84112, USA.
Shinichiro EnomotoDepartment of Biology, University of Utah, 257 South 1400 East, Salt Lake City, UT 84112, USA.
D Grant JacksonDepartment of Biology, University of Utah, 257 South 1400 East, Salt Lake City, UT 84112, USA.
Mark A FisherDepartment of Pathology, University of Utah School of Medicine, 15 North Medical Drive East, Salt Lake City, UT 84132, USA.
Colin DaleDepartment of Biology, University of Utah, 257 South 1400 East, Salt Lake City, UT 84112, USA.
University of Utah · US

Funding

The role of PhoP-PhoQ in an insect-bacterial symbiosisR01AI095736 · NIAID · UNIVERSITY OF UTAH · PI DALE, COLIN · 2012 to 2016
$1.8M
NIAID NIH HHS 1R01AI095736NIAID NIH HHS R01 AI095736
6 · The paper itself

Abstract

A Gram-stain-negative bacterium, isolated from a human wound was previously found to share an unprecedentedly close relationship with Sodalis glossinidius and other members of the Sodalis-allied clade of insect symbionts. This relationship was inferred from sequence analysis of the 16S rRNA gene and genomic comparisons and suggested the strain belonged to a novel species. Biochemical and genetic analyses supported this suggestion and demonstrated that the organism has a wide repertoire of metabolic properties, which is consistent with the presence of a relatively large gene inventory. Among members of the Sodalis-allied clade, this is the first representative that has sufficient metabolic capabilities to sustain growth in minimal media. On the basis of the results of this study, we propose that this organism be classified as a representative of a novel species, Sodalis praecaptivus sp. nov. (type strain HS(T) = DSM 27494(T) = ATCC BAA-2554(T)).

Indexed as

PhylogenyAgedAnimalsBacterial ProteinsBase CompositionChaperonin 60DNA, BacterialEnterobacteriaceaeGenome, BacterialHumansInsectaMolecular Sequence DataRNA, Ribosomal, 16SSequence Analysis, DNASymbiosisWounds and InjuriesBacterial ProteinsChaperonin 60DNA, BacterialRNA, Ribosomal, 16S

Identifiers

PMID25782768
PMCPMC4635462
OpenAlexW1983388987

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.