Evidence map›Paper›PMID 25782671›Full record

ArticleEuropean journal of human genetics : EJHG2016

The disruption of a novel limb cis-regulatory element of SHH is associated with autosomal dominant preaxial polydactyly-hypertrichosis.

Florence Petit, Anne-Sophie Jourdain, Muriel Holder-Espinasse, Boris Keren, Joris Andrieux, Martine Duterque-Coquillaud, Nicole Porchet, Sylvie Manouvrier-Hanu, Fabienne Escande

Open access · bronzeAbstract read
In one paragraph

Article in European journal of human genetics : EJHG, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
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  7. Genetic heterogeneity of polydactyly in Maine Coon cats.Journal of feline medicine and surgery · 2020
    Article
  8. Genome sequencing and implications for rare disorders.Orphanet journal of rare diseases · 2019
    Review
  9. A multidisciplinary review of triphalangeal thumb.The Journal of hand surgery, European volume · 2019
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Florence PetitCentre de Référence Maladies Rares pour les syndromes malformatifs d'origine génétique, Service de Génétique Clinique, Hôpital Jeanne de Flandre, CHRU, Lille, France.
Anne-Sophie JourdainRADEME (Research team on rare developmental and metabolic diseases), Université Lille 2, Lille, France.
Muriel Holder-EspinasseUniversité Lille 2, Lille, France.
Boris KerenLaboratoire de Cytogénétique, Groupe Hospitalier Pitié-Salpétrière, CHU, Paris, France.
Joris AndrieuxRADEME (Research team on rare developmental and metabolic diseases), Université Lille 2, Lille, France.
Martine Duterque-CoquillaudUniversité Lille 2, Lille, France.
Nicole PorchetUniversité Lille 2, Lille, France.
Sylvie Manouvrier-HanuCentre de Référence Maladies Rares pour les syndromes malformatifs d'origine génétique, Service de Génétique Clinique, Hôpital Jeanne de Flandre, CHRU, Lille, France.
Fabienne EscandeRADEME (Research team on rare developmental and metabolic diseases), Université Lille 2, Lille, France.
Université de Lille · FRHôpital Jeanne de Flandre · FRGuy's Hospital · GBInstitut Pasteur · FRLaboratoire de Génétique Médicale

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The expression gradient of the morphogen Sonic Hedgehog (SHH) is crucial in establishing the number and the identity of the digits during anteroposterior patterning of the limb. Its anterior ectopic expression is responsible for preaxial polydactyly (PPD). Most of these malformations are due to the gain-of-function of the Zone of Polarizing Activity Regulatory Sequence, the only limb-specific enhancer of SHH known to date. We report a family affected with a novel condition associating PPD and hypertrichosis of the upper back, following an autosomal dominant mode of inheritance. This phenotype is consistent with deregulation of SHH expression during limb and follicle development. In affected members, we identified a 2 kb deletion located ~240 kb upstream from the SHH promoter. The deleted sequence is capable of repressing the transcriptional activity of the SHH promoter in vitro, consistent with a silencer activity. We hypothesize that the deletion of this silencer could be responsible for SHH deregulation during development, leading to a PPD-hypertrichosis phenotype.

Indexed as

Base SequenceSequence DeletionSilencer Elements, Transcriptional5' Untranslated RegionsAdolescentAdultAgedBody PatterningChildFemaleFingersGene Expression Regulation, DevelopmentalGenes, DominantHaplotypesHedgehog ProteinsHumans5' Untranslated RegionsHedgehog ProteinsSHH protein, human

Identifiers

PMID25782671
PMCPMC4795241
OpenAlexW2078842518

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.