Evidence map›Paper›PMID 25782668›Full record

ArticleEuropean journal of human genetics : EJHG2016

Double SMCHD1 variants in FSHD2: the synergistic effect of two SMCHD1 variants on D4Z4 hypomethylation and disease penetrance in FSHD2.

Marlinde L van den Boogaard, Richard J F L Lemmers, Pilar Camaño, Patrick J van der Vliet, Nicol Voermans, Baziel G M van Engelen, Adolfo Lopez de Munain, Stephen J Tapscott, Nienke van der Stoep, Rabi Tawil and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in European journal of human genetics : EJHG, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Influence ofInternational journal of molecular sciences · 2023
    Review
  5. Review
  6. IntronicJournal of medical genetics · 2019
    Article
  7. Article
  8. Article
  9. Observational
  10. Article
  11. Article
  12. Article
  13. Article
  14. Genetic and epigenetic contributors to FSHD.Current opinion in genetics & development · 2015
    Review
  15. Genome-wide binding and mechanistic analyses of Smchd1-mediated epigenetic regulation.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 3 countries.

Marlinde L van den BoogaardDepartment of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Richard J F L LemmersDepartment of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Pilar CamañoNeurosciences, BioDonostia Health Research Institute, Hospital Donostia, San Sebastián, Spain.
Patrick J van der VlietDepartment of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Nicol VoermansDepartment of Neurology, Radboud University Medical Centre, Nijmegen, The Netherlands.
Baziel G M van EngelenDepartment of Neurology, Radboud University Medical Centre, Nijmegen, The Netherlands.
Adolfo Lopez de MunainNeurosciences, BioDonostia Health Research Institute, Hospital Donostia, San Sebastián, Spain.
Stephen J TapscottDivision of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.
Nienke van der StoepDepartment of Clinical Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Rabi TawilDepartment of Neurology, University of Rochester Medical Center, Rochester, MN, USA.
Silvère M van der MaarelDepartment of Human Genetics, Leiden University Medical Center, Leiden, The Netherlands.
Leiden University Medical Center · NLBiogipuzkoa Health Research Institute · ESRadboud University Nijmegen · NLFred Hutch Cancer Center · USUniversity of Rochester Medical Center · US

Funding

The Pathogenesis of Facioscapulohumeral Muscular DystrophyP01NS069539 · NINDS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI TAPSCOTT, STEPHEN J · 2010 to 2019
$12.3M
MYOTONIC DYSTROPHY LOCUS CONTROLR01AR045203 · NIAMS · FRED HUTCHINSON CANCER RESEARCH CENTER · PI TAPSCOTT, STEPHEN J · 1998 to 2025
$9.4M
NIAMS NIH HHS R01 AR045203NIAMS NIH HHS R01AR045203NINDS NIH HHS P01 NS069539NINDS NIH HHS P01NS069539
6 · The paper itself

Abstract

Facioscapulohumeral muscular dystrophy (FSHD) predominantly affects the muscles in the face, trunk and upper extremities and is marked by large clinical variability in disease onset and progression. FSHD is associated with partial chromatin relaxation of the D4Z4 repeat array on chromosome 4 and the somatic expression of the D4Z4 encoded DUX4 gene. The most common form, FSHD1, is caused by a contraction of the D4Z4 repeat array on chromosome 4 to a size of 1-10 units. FSHD2, the less common form of FSHD, is most often caused by heterozygous variants in the chromatin modifier SMCHD1, which is involved in the maintenance of D4Z4 methylation. We identified three families in which the proband carries two potentially damaging SMCHD1 variants. We investigated whether these variants were located in cis or in trans and determined their functional consequences by detailed clinical information and D4Z4 methylation studies. In the first family, both variants in trans were shown to act synergistically on D4Z4 hypomethylation and disease penetrance, in the second family both SMCHD1 function-affecting variants were located in cis while in the third family one of the two variants did not affect function. This study demonstrates that having two SMCHD1 missense variants that affect function is compatible with life in males and females, which is remarkable considering its role in X inactivation in mice. The study also highlights the variability in SMCHD1 variants underlying FSHD2 and the predictive value of D4Z4 methylation analysis in determining the functional consequences of SMCHD1 variants of unknown significance.

Indexed as

Chromosomes, Human, Pair 4MutationAdultAgedAge of OnsetBase SequenceChromatinChromosomal Proteins, Non-HistoneDisease ProgressionDNA MethylationExonsFemaleGene ExpressionGenetic LociHomeodomain ProteinsHumansChromatinChromosomal Proteins, Non-HistoneDUX4L1 protein, humanHomeodomain ProteinsSMCHD1 protein, human

Identifiers

PMID25782668
PMCPMC4795239
OpenAlexW1993957023

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.