Evidence map›Paper›PMID 25781460›Full record

ArticlePloS one2015

Inhibitor and substrate binding induced stability of HIV-1 protease against sequential dissociation and unfolding revealed by high pressure spectroscopy and kinetics.

Marek Ingr, Reinhard Lange, Věra Halabalová, Alaa Yehya, Josef Hrnčiřík, Dominique Chevalier-Lucia, Laetitia Palmade, Claire Blayo, Jan Konvalinka, Eliane Dumay

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Marek IngrTomas Bata University in Zlín, Faculty of Technology, Department of Physics and Material Engineering, nám. T.G. Masaryka 5555, 76001 Zlín, Czech Republic; Charles University in Prague, Department of Biochemistry, Hlavova 2030, 128 43 Prague 2, Czech Republic.
Reinhard LangeUniversité Montpellier 2, INRA UMR IATE, Biochimie et Technologie Alimentaires, cc023, Place Eugene Bataillon, 34095 Montpellier cedex 05, France.
Věra HalabalováTomas Bata University in Zlín, Faculty of Technology, Department of Physics and Material Engineering, nám. T.G. Masaryka 5555, 76001 Zlín, Czech Republic.
Alaa YehyaINSERM U710, Université Montpellier 2, Place Eugene Bataillon, 34095 Montpellier cedex 05, France.
Josef HrnčiříkTomas Bata University in Zlín, Faculty of Technology, Department of Physics and Material Engineering, nám. T.G. Masaryka 5555, 76001 Zlín, Czech Republic.
Dominique Chevalier-LuciaUniversité Montpellier 2, UMR IATE, Biochimie et Technologie Alimentaires, cc023, 2 Place Eugene Bataillon, 34095 Montpellier cedex 05, France.
Laetitia PalmadeUniversité Montpellier 2, UMR IATE, Biochimie et Technologie Alimentaires, cc023, 2 Place Eugene Bataillon, 34095 Montpellier cedex 05, France.
Claire BlayoUniversité Montpellier 2, UMR IATE, Biochimie et Technologie Alimentaires, cc023, 2 Place Eugene Bataillon, 34095 Montpellier cedex 05, France.
Jan KonvalinkaCharles University in Prague, Department of Biochemistry, Hlavova 2030, 128 43 Prague 2, Czech Republic.
Eliane DumayUniversité Montpellier 2, UMR IATE, Biochimie et Technologie Alimentaires, cc023, 2 Place Eugene Bataillon, 34095 Montpellier cedex 05, France.
Université de Montpellier · FRTomas Bata University in Zlín · CZCharles University · CZInserm · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

High-pressure methods have become an interesting tool of investigation of structural stability of proteins. They are used to study protein unfolding, but dissociation of oligomeric proteins can be addressed this way, too. HIV-1 protease, although an interesting object of biophysical experiments, has not been studied at high pressure yet. In this study HIV-1 protease is investigated by high pressure (up to 600 MPa) fluorescence spectroscopy of either the inherent tryptophan residues or external 8-anilino-1-naphtalenesulfonic acid at 25°C. A fast concentration-dependent structural transition is detected that corresponds to the dimer-monomer equilibrium. This transition is followed by a slow concentration independent transition that can be assigned to the monomer unfolding. In the presence of a tight-binding inhibitor none of these transitions are observed, which confirms the stabilizing effect of inhibitor. High-pressure enzyme kinetics (up to 350 MPa) also reveals the stabilizing effect of substrate. Unfolding of the protease can thus proceed only from the monomeric state after dimer dissociation and is unfavourable at atmospheric pressure. Dimer-destabilizing effect of high pressure is caused by negative volume change of dimer dissociation of -32.5 mL/mol. It helps us to determine the atmospheric pressure dimerization constant of 0.92 μM. High-pressure methods thus enable the investigation of structural phenomena that are difficult or impossible to measure at atmospheric pressure.

Indexed as

Protein FoldingAnilino NaphthalenesulfonatesAtmospheric PressureDarunavirDimerizationHIV ProteaseHIV Protease InhibitorsHumansKineticsModels, MolecularProtein ConformationProtein MultimerizationProtein StabilitySpectrometry, FluorescenceThermodynamicsTryptophan1-anilino-8-naphthalenesulfonateAnilino NaphthalenesulfonatesDarunavirHIV ProteaseHIV Protease Inhibitorsp16 protease, Human immunodeficiency virus 1Tryptophan

Identifiers

PMID25781460
PMCPMC4362767
OpenAlexW2062461089

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.