Evidence map›Paper›PMID 25781334›Full record

ArticlePloS one2015

Refined requirements for protein regions important for activity of the TALE AvrBs3.

Tom Schreiber, Anika Sorgatz, Felix List, Doreen Blüher, Sabine Thieme, Matthias Wilmanns, Ulla Bonas

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
10.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Points of View on the Tools for Genome/Gene Editing.International journal of molecular sciences · 2021
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. The TAL Effector AvrBs3 fromFrontiers in microbiology · 2017
    Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Suppression ofFrontiers in plant science · 2016
    Article
  17. Non-host Resistance Induced by theFrontiers in plant science · 2016
    Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Tom SchreiberInstitute for Biology, Department of Genetics, Martin Luther University Halle-Wittenberg, Halle (Saale), Germany.
Anika SorgatzInstitute for Biology, Department of Genetics, Martin Luther University Halle-Wittenberg, Halle (Saale), Germany.
Felix ListInstitute for Biology, Department of Genetics, Martin Luther University Halle-Wittenberg, Halle (Saale), Germany; European Molecular Biology Laboratory, Hamburg Unit, Notkestraße 85, Hamburg, Germany.
Doreen BlüherInstitute for Biology, Department of Genetics, Martin Luther University Halle-Wittenberg, Halle (Saale), Germany.
Sabine ThiemeInstitute for Biology, Department of Genetics, Martin Luther University Halle-Wittenberg, Halle (Saale), Germany.
Matthias WilmannsEuropean Molecular Biology Laboratory, Hamburg Unit, Notkestraße 85, Hamburg, Germany.
Ulla BonasInstitute for Biology, Department of Genetics, Martin Luther University Halle-Wittenberg, Halle (Saale), Germany.
Martin Luther University Halle-Wittenberg · DEEuropean Molecular Biology Laboratory · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

AvrBs3, the archetype of the family of transcription activator-like (TAL) effectors from phytopathogenic Xanthomonas bacteria, is translocated by the type III secretion system into the plant cell. AvrBs3 localizes to the plant cell nucleus and activates the transcription of target genes. Crucial for this is the central AvrBs3 region of 17.5 34-amino acid repeats that functions as a DNA-binding domain mediating recognition in a "one-repeat-to-one base pair" manner. Although AvrBs3 forms homodimers in the plant cell cytosol prior to nuclear import, it binds DNA as a monomer. Here, we show that complex formation of AvrBs3 proteins negatively affects their DNA-binding affinity in vitro. The conserved cysteine residues at position 30 of each repeat facilitate AvrBs3 complexes via disulfide bonds in vitro but are also required for the gene-inducing activity of the AvrBs3 monomer, i.e., activation of plant gene promoters. Our data suggest that the latter is due to a contribution to protein plasticity and that cysteine substitutions to alanine or serine result in a different DNA-binding mode. In addition, our studies revealed that extended parts of both the N-terminal and C-terminal regions of AvrBs3 contribute to DNA binding and, hence, gene-inducing activity in planta.

Indexed as

Amino Acid SequenceBacterial ProteinsDNA, PlantMolecular Sequence DataPromoter Regions, GeneticProtein BindingProtein MultimerizationProtein Structure, TertiaryTranscription FactorsXanthomonasBacterial ProteinsDNA, PlantTranscription Factors

Identifiers

PMID25781334
PMCPMC4363659
OpenAlexW1970438413

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.