Evidence map›Paper›PMID 25781211›Full record

ArticleACS chemical biology2015

Optochemical dissection of T-box gene-dependent medial floor plate development.

Alexander Y Payumo, Whitney J Walker, Lindsey E McQuade, Sayumi Yamazoe, James K Chen

Open access · greenAbstract read
In one paragraph

Article in ACS chemical biology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.6field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 15 citations in OpenAlex.

  1. Bicyclic Caged Morpholino Oligonucleotides for Optical Gene Silencing.Chembiochem : a European journal of chemical biology · 2022
    Article
  2. Review
  3. Article
  4. Article
  5. tbx6l and tbx16 are redundantly required for posterior paraxial mesoderm formation during zebrafish embryogenesis.Developmental dynamics : an official publication of the American Association of Anatomists · 2017
    Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Alexander Y Payumo†Department of Chemical and Systems Biology, ‡Department of Developmental Biology, Stanford University School of Medicine, Stanford, California 94305, United States.
Whitney J Walker†Department of Chemical and Systems Biology, ‡Department of Developmental Biology, Stanford University School of Medicine, Stanford, California 94305, United States.
Lindsey E McQuade†Department of Chemical and Systems Biology, ‡Department of Developmental Biology, Stanford University School of Medicine, Stanford, California 94305, United States.
Sayumi Yamazoe†Department of Chemical and Systems Biology, ‡Department of Developmental Biology, Stanford University School of Medicine, Stanford, California 94305, United States.
James K Chen†Department of Chemical and Systems Biology, ‡Department of Developmental Biology, Stanford University School of Medicine, Stanford, California 94305, United States.
Stanford University · US

Funding

TRAINING & OUTREACH COREP50GM107615 · NIGMS · STANFORD UNIVERSITY · PI FERRELL, JAMES E. · 2013 to 2017
$10.9M
Deciphering T-box gene-dependent mesoderm development with synthetic probesR01GM087292 · NIGMS · STANFORD UNIVERSITY · PI CHEN, JAMES K · 2010 to 2013
$1.3M
Chemical Embryology: Technologies for Manipulating and Visualizing DevelopmentDP1HD075622 · NICHD · STANFORD UNIVERSITY · PI CHEN, JAMES K · 2012 to 2012
$792k
Chemical genetic dissection of Hipk4-dependent Hedgehog pathway activationR21HD078385 · NICHD · STANFORD UNIVERSITY · PI CHEN, JAMES K · 2014 to 2015
$438k
NCCDPHP CDC HHS DP1 HD075622NICHD NIH HHS DP1 HD075622NICHD NIH HHS R21 HD078385NIGMS NIH HHS P50 GM107615NIGMS NIH HHS R01 GM087292
6 · The paper itself

Abstract

In addition to their cell-autonomous roles in mesoderm development, the zebrafish T-box transcription factors no tail a (ntla) and spadetail (spt/tbx16) are required for medial floor plate (MFP) formation. Posterior MFP cells are completely absent in zebrafish embryos lacking both Ntla and Spt function, and genetic mosaic analyses have shown that the two T-box genes promote MFP development in a non-cell-autonomous manner. On the basis of these observations, it has been proposed that Ntla/Spt-dependent mesoderm-derived signals are required for the induction of posterior but not anterior MFP cells. To investigate the mechanisms by which Ntla and Spt regulate MFP development, we have used photoactivatable caged morpholinos (cMOs) to silence these T-box genes with spatiotemporal control. We find that posterior MFP formation requires Ntla or Spt activity during early gastrulation, specifically in lateral margin-derived cells that converge toward the midline during epiboly and somitogenesis. Nodal signaling-dependent MFP specification is maintained in the absence of Ntla and Spt function; however, midline cells in ntla;spt morphants exhibit aberrant morphogenetic movements, resulting in their anterior mislocalization. Our findings indicate that Ntla and Spt do not differentially regulate MFP induction along the anterior-posterior axis; rather, the T-box genes act redundantly within margin-derived cells to promote the posterior extension of MFP progenitors.

Indexed as

AnimalsBrachyury ProteinEmbryo, NonmammalianFetal ProteinsGene Expression Regulation, DevelopmentalLightMesodermMolecular ProbesMorphogenesisMorpholinosPhotochemical ProcessesSignal TransductionT-Box Domain ProteinsZebrafishZebrafish ProteinsBrachyury ProteinFetal ProteinsMolecular ProbesMorpholinosT-Box Domain Proteinstbx16 protein, zebrafishZebrafish Proteins

Identifiers

PMID25781211
PMCPMC4672996
OpenAlexW2042064656

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.